Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., putative efflux protein (RefSeq) from Shewanella sp. ANA-3

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 86/351 (24%), Positives = 158/351 (45%), Gaps = 31/351 (8%)

Query: 24  LLLAGCGEAPQ---ISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQRADLAFRISGRL 80
           L+LAGCG +      ++  P+V+  + E+ A        F+GV+ +  RADL+FR+ G L
Sbjct: 21  LVLAGCGSSEDQTLTTSKRPLVQ--VMELPAPVTDKGYKFSGVLESENRADLSFRVQGVL 78

Query: 81  TDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKT------Q 134
            ++  +EG +V KGQ++A LD  D + ++     +L   +  ++ AK   ++       +
Sbjct: 79  AELLAEEGVEVTKGQVIARLDPHDFQVSVLELTAKLDEAKTAHQLAKIELQRVKSAINDR 138

Query: 135 AISKAELDKVTNRYDLAKNRVE-------EAKRKLEYTQITAPFDGVISEKTIENFAQVQ 187
           AI+  +LD+       AK  VE       +A+  L YT++T+P+DGV+ +  ++   QV 
Sbjct: 139 AIASVKLDRAVAAEARAKAGVELVSQSLKKAQDALRYTELTSPYDGVVGKTFVDQHEQVN 198

Query: 188 ANQVIMILQDLNDLEVAIEIPH----RVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQ 243
               I+ +     L   +++P      + L             A+P       +   ++ 
Sbjct: 199 VGTKILTIHRPERLNAVVDVPESQIWNLKLGTEGQVTWFEGTEAVP-----AVVAKIASV 253

Query: 244 PSSDSQTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQF 303
           P    +TY V      +   + +    A  + VA   A +  +  +P  A V   + + +
Sbjct: 254 PDRLKRTYEVTFNLAHVP--KQLVAGKAVSVDVALPYASDKPIYCIPAMA-VTSRESQLY 310

Query: 304 VWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
           V  V A++ +      +  T  D + +T  L  GE ++IAG + V EG  V
Sbjct: 311 VNRVIAEHVSATPVESVSQT-DDSLCVTGGLTSGESIVIAGGAFVEEGQAV 360