Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 354 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (274), Expect = 8e-29
 Identities = 93/341 (27%), Positives = 163/341 (47%), Gaps = 20/341 (5%)

Query: 25  LLAGCGEAPQISAPAPVVKPALTEIVASQRASDL-TFNGVVRAAQRADLAFRISGRLTDI 83
           +LA CGE            P  T  V     S   +    + A Q A++  RI+G +  I
Sbjct: 18  MLAACGEEEVAKKEEQYAIPVETTTVMQGNVSSFYSTTATLEAPQEANVVSRIAGLIEAI 77

Query: 84  AVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFEKTQAISKAELDK 143
            V+EGD+V+KGQ+LA +D++  +  L+ ++ E+K  EQE  R K +  K + IS   + K
Sbjct: 78  NVEEGDRVQKGQILAVIDAKRQQYDLDRSEAEVKIIEQELNRLKKMTNK-EFISADSMAK 136

Query: 144 VTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIE--NFAQVQANQVIMILQDLNDL 201
           +      A  R + A+ +++ + + +P DG+++++ ++  N AQ   +   ++ QD  +L
Sbjct: 137 LEYNLQAAIARRDLAELQVKESHVVSPIDGIVAKRYVKAGNMAQEFGDLFYIVNQD--EL 194

Query: 202 EVAIEIPHRVMLSGVRNTRAIAELSAIPNQQ----FDLKLRTYSTQPSSDSQTYSVVLGF 257
              + +P + + S     R   E     NQQ       K+   S      S T+ V L  
Sbjct: 195 HGIVHLPEQQLTS----LRLGQEAQVFSNQQSKNAIHAKVLRISPVVDPQSGTFKVTLAV 250

Query: 258 EDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQNQAEKRY 317
            + +   +  GM  +V    D       +IT+P +AL+ +   KQ ++V++  N A +R 
Sbjct: 251 PN-QNAHLKAGMFTRVELKYD---THENVITVPYSALI-NQDNKQALYVIDGSN-ANRRE 304

Query: 318 VDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVRPYT 358
           V+IG    D V +   +KPGEQV+  G  ++++   V   T
Sbjct: 305 VEIGYREGDSVEVVSGIKPGEQVVTRGQQNLKDQSLVEVIT 345