Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 85/345 (24%), Positives = 160/345 (46%), Gaps = 16/345 (4%)

Query: 19  VIASALLLAGCGEAPQISAPAPV-VKPALTEIVASQRAS------DLTFNGVVRAAQRAD 71
           +I  A+L AG      +   AP   K  LT  V    A+      ++   G  +A +   
Sbjct: 5   IIIIAILAAGWFGYQSMQPQAPQQAKVKLTPNVVIAMAAMAPVRDEVEAIGTNKAFESVT 64

Query: 72  LAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKAIFE 131
           +  +++  +T +   +GD VKKG LL  L + +    ++ AQ+++ + ++E  R  ++  
Sbjct: 65  ITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNAEQIAKVKVAQVKVSDNQRELARISSLVT 124

Query: 132 KTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQANQV 191
            ++ +++ E D++    D  +  +E+A+  L    I APF+G +  + +   + V     
Sbjct: 125 -SRTVAELERDRLQTLIDTTRAELEQAQSSLNDRSIVAPFNGRLGLRQVSVGSLVTPGTE 183

Query: 192 IMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDSQTY 251
           I  L D++ +++   +P R +       +  A+  A P++ F  K +  S     +  T 
Sbjct: 184 ITTLDDISKIKLDFSVPERFIQDLQPGKQVEAKAVAFPDEIF--KGKVISIDSRVNPTTR 241

Query: 252 SVVLGFE-DLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVNAQ 310
           +V++  E      R++PGM  KV  +          + LP +A++P  Q + FV+ VN  
Sbjct: 242 AVIVRAEIPNPDLRLLPGMLMKVKLI----KRSREALMLPESAIIP-IQKEHFVYSVNKD 296

Query: 311 NQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTVR 355
           N  E++ V IG   +  V I   L+ GE V+I G+  V  G  V+
Sbjct: 297 NVIERKQVTIGIRTRGWVEILGGLEIGENVVIRGLLKVHPGDVVK 341