Pairwise Alignments

Query, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 370 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  110 bits (274), Expect = 8e-29
 Identities = 91/351 (25%), Positives = 163/351 (46%), Gaps = 17/351 (4%)

Query: 8   SMAAKRSLLSAVIASALLLAGCGE-APQISAPAPVVKPALTEIVASQRASDLTFNGVVRA 66
           ++A   ++ +AV  S +L A   E AP +    PVV     E+V    A  ++  G + A
Sbjct: 7   AIALIAAVATAVSFSDVLQAAKPESAPHLMRTVPVVTG---EVVEHPLAQSISLIGKLAA 63

Query: 67  AQRADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRA 126
            +   +A +++G++  IAV     VKKGQLL  LD   A+ A+  A   L +  ++ R  
Sbjct: 64  DRAVVIAPQVTGKIKQIAVTSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLREF 123

Query: 127 KAIFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQV 186
           + +  +  AI++ E+D      D+A+ R+  A+  L Y  + APF G            V
Sbjct: 124 EKLISR-NAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGKTGLINFSEGKMV 182

Query: 187 QANQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSS 246
                +M L DL+ + + +++P   +          A   A P + F  K+     + + 
Sbjct: 183 SIGTELMTLDDLSSMRLDLQVPEHFLSQLSIGMPVSATSRAWPGETFIGKVVAIDPRVNE 242

Query: 247 DSQTYSVVLGFEDLKGFRVMPGM---SAKVIPVADKPADENTLITLPLTALVPDNQGKQF 303
           ++    + + FE+ K  R+ PGM   S    P    P        +P+ AL      K++
Sbjct: 243 ETLNLKIRVQFENAKN-RLKPGMMMSSTLTFPPISAP-------IVPVQALEYSGT-KRY 293

Query: 304 VWVVNAQNQAEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMTV 354
           V+VV   + A +  V +G    D+V+I   LK G++V++ G+ ++R+G+ +
Sbjct: 294 VYVVGEDHIAHRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDGLKI 344