Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Small-conductance mechanosensitive channel from Pseudomonas fluorescens FW300-N2E2

 Score =  154 bits (388), Expect = 6e-42
 Identities = 79/213 (37%), Positives = 123/213 (57%), Gaps = 1/213 (0%)

Query: 341 MQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMML 400
           +Q F  +++  ++ ++ I+   S IG+     +   G AG+ IG ALQ +L+NFA G+++
Sbjct: 62  LQGFISTLANIILKILLIVSVASMIGVETTSFVAAIGAAGLAIGLALQGSLANFAGGVLI 121

Query: 401 LIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIR 460
           L++RPF +GD++ A GV G V  + + +T +RT DN+ +IVPN  +   +I N   +  R
Sbjct: 122 LLFRPFRIGDWIEAQGVAGTVDSIQIFHTVLRTGDNKTVIVPNGNLSNGIITNTNRQPTR 181

Query: 461 RVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTD 520
           +V    G+ Y  DL KA  VL D+ K    VL  P P   + TL  SSI   +R WVKT 
Sbjct: 182 KVVFDVGVDYQADLQKAREVLLDLAKDE-RVLADPAPEAVISTLGDSSITVSLRIWVKTA 240

Query: 521 DYWDVYWDVTKEVKLRFDREGISIPFPQQDVHL 553
           DYW V + + ++ + R    GI IPFPQ+ + +
Sbjct: 241 DYWSVMFMLNEQARDRLKDAGIDIPFPQRVIRV 273