Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., Small-conductance mechanosensitive channel from Pseudomonas stutzeri RCH2

 Score =  157 bits (398), Expect = 4e-43
 Identities = 85/233 (36%), Positives = 136/233 (58%), Gaps = 10/233 (4%)

Query: 330 VNSKNIRISHLMQ---------DFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAG 380
           +N+   ++S L+Q          F  S++  V+ V+ ++   S IG+     +   G AG
Sbjct: 40  INTLTAKVSSLLQRRQVDPTLHGFIGSLASVVLKVLLLVSVASMIGVETTSFIAVIGAAG 99

Query: 381 VIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIII 440
           + IG ALQ +L+NFA G+++L++RPF VG+++ A G+ G V+ + + +T ++T DN+ ++
Sbjct: 100 LAIGLALQGSLANFAGGVLILLFRPFRVGEWIEAQGIAGTVNSIQIFHTVLKTGDNKTVV 159

Query: 441 VPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIK 500
           VPN  +    I N + E  RR D+  GI YS D+  A  VL +I +  P VL+ PEP + 
Sbjct: 160 VPNGALSNGHITNFSREPRRRADINIGIDYSSDIKLARQVLLEIAED-PRVLREPEPVVF 218

Query: 501 VHTLNTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGISIPFPQQDVHL 553
           V  L  SS++  +R WV T D+W V +  T++ K R    G+ IPFPQ+ VHL
Sbjct: 219 VTGLGDSSVNLSLRVWVATADFWPVTFSFTEQAKERLTAVGVGIPFPQRVVHL 271