Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 1080 a.a., transporter, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 92.4 bits (228), Expect = 8e-23
 Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 2/210 (0%)

Query: 347  SMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPF 406
            ++S  +V ++G LVG S +G+  + +        V +GF LQ+  +NF +G+++L  +P 
Sbjct: 857  TVSRYLVVMVGTLVGFSTLGMEWSKLQWLIAALSVGLGFGLQEIFANFISGLIILFEKPV 916

Query: 407  DVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSK-IWGDVIKNVTHERIRRVDMV 465
             +GD V    + G VS + +  TTI  +D + IIVPN   I   +I     + I RV + 
Sbjct: 917  RIGDTVTIRDLTGTVSKIQIRATTIIDWDRKEIIVPNKAFITEQLINWSLSDPITRVIIK 976

Query: 466  FGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVK-TDDYWD 524
             G+    D  K EA L   +K     L TPEP +        + D+ VR + K     W 
Sbjct: 977  VGVARDSDPAKVEASLYQAIKECQHALHTPEPEVWFAGFGQHTQDYEVRAYAKDMGSRWP 1036

Query: 525  VYWDVTKEVKLRFDREGISIPFPQQDVHLH 554
            +  D+ K +  +     + + +PQ ++ ++
Sbjct: 1037 LRHDLHKRISTKLKENNLELAYPQMEITIN 1066



 Score = 26.2 bits (56), Expect = 0.007
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 182 TLRERINQRLRLLSASLEYLKQQISVINNQIKSSPESEKANLQLALLFTQQRLDIVTKSL 241
           T +  ++Q+   L+ + E L QQ +    Q+    + EKA LQ AL  TQ+ L +  +  
Sbjct: 49  TPQPSVSQQTLELTETAELLAQQAAEYQQQLLGFVD-EKARLQKALAATQKDLPLARRQD 107

Query: 242 RSVVGIADQFEIET-ADYKRQIFQVTGSITQ 271
            +    A   ++ T  + + Q+ Q   ++ Q
Sbjct: 108 LNQQASAAYLQLSTLKEEETQLIQQHSTLLQ 138