Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., putative small-conductance mechanosensitive channel (RefSeq) from Shewanella amazonensis SB2B

 Score =  186 bits (472), Expect = 1e-51
 Identities = 89/245 (36%), Positives = 151/245 (61%), Gaps = 2/245 (0%)

Query: 309 LLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLN 368
           ++I L  K  + + + +    +N++  ++   +  F  +++  VV+V  ++  L QIG+ 
Sbjct: 26  IIIFLVGKYFSNLVKKLTTKMLNNR--KVDPTVTSFVANLAWAVVFVFTVIATLGQIGVQ 83

Query: 369 LAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVN 428
            A ++   G AG+ +G ALQ +LSNFAAG++++++RP  VGD++ A G+ G V  +++ +
Sbjct: 84  TASLVAVIGAAGLAVGLALQGSLSNFAAGVLMVLFRPCRVGDYIEAAGIAGTVDEITIFS 143

Query: 429 TTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSH 488
           T +RT DN++I+ PNS I    I N +    RRVDMV G+ Y  D+   + VLTDI+ ++
Sbjct: 144 TKLRTPDNKVIVAPNSAIMNGTITNYSAMDTRRVDMVIGVAYDADIKLTKKVLTDILDNN 203

Query: 489 PAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGISIPFPQ 548
             VLK P   + +  L  SSI+F+VRPWVK  D+W   +++T+++K   D   I IP+PQ
Sbjct: 204 QYVLKDPAYTVALSELGASSINFVVRPWVKGADFWAAKFELTEQIKNALDANNIGIPYPQ 263

Query: 549 QDVHL 553
            D+H+
Sbjct: 264 MDIHV 268