Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 277 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  117 bits (293), Expect = 6e-31
 Identities = 71/265 (26%), Positives = 138/265 (52%), Gaps = 4/265 (1%)

Query: 289 SLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSM 348
           ++ N L    V++ FQL   LLI L     A     +V        I I+  + +F  ++
Sbjct: 15  NVYNLLTEFLVKYSFQLVGALLIFLLGLWVANKISNLVAKQFEKHEIDIT--LSNFVSNL 72

Query: 349 SGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDV 408
              ++ V+  ++ L ++G+++ P++   G A +  G ALQ  LSN+AAG+ +++ RPF V
Sbjct: 73  VRILIIVMVGVIALGKLGISITPMVAAIGAASLGAGLALQGMLSNYAAGVTIIVTRPFVV 132

Query: 409 GDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGI 468
           G+ +   GV G V  + L  T +   + ++I +PN  I G+++ N   +++  V++ F I
Sbjct: 133 GNTIEIQGVSGVVKSIHLGLTLLTNEEGEVISIPNKHIVGEILHNSFSDKL--VEIRFNI 190

Query: 469 GYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYWD 528
            Y+ D  +  A+   ++ ++  V +   P I ++  N+  ++  +R WV T+ Y+   + 
Sbjct: 191 SYASDANQVLAIAQQVLDANEEVNQERAPQIGINGFNSIGLEIGLRYWVPTNRYYQNKYQ 250

Query: 529 VTKEVKLRFDREGISIPFPQQDVHL 553
           V  E+     + GI IP P +++H+
Sbjct: 251 VNLELINALRQAGIEIPCPVREIHI 275