Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 1060 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score = 86.3 bits (212), Expect = 6e-21
 Identities = 58/209 (27%), Positives = 100/209 (47%), Gaps = 2/209 (0%)

Query: 347  SMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPF 406
            ++S  +V   G+L G S +G+  + +        V +GF LQ+  +NF +G+++L  +P 
Sbjct: 839  TVSRYLVVFFGMLSGFSTLGMEWSKLQWLVAALSVGLGFGLQEIFANFISGLIILFEKPV 898

Query: 407  DVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSK-IWGDVIKNVTHERIRRVDMV 465
             +GD V    + G VS + +  TTI  +D + IIVPN   I   +I     + I RV + 
Sbjct: 899  RIGDTVTIRELTGTVSKIQIRATTIVDWDRKEIIVPNKAFITEQLINWSLSDPITRVIVY 958

Query: 466  FGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVK-TDDYWD 524
              +    D  + EA L   VK     L TPEP +        + D+ +R + K  +  W 
Sbjct: 959  VSVARDSDPARVEAALYQAVKECDDALTTPEPEVWFAGFGQHTQDYEIRAYAKDMNTRWP 1018

Query: 525  VYWDVTKEVKLRFDREGISIPFPQQDVHL 553
            +   + K+V  +     + + +PQ +VH+
Sbjct: 1019 LRHKLHKQVSKKLRENHLELAYPQLEVHI 1047



 Score = 29.6 bits (65), Expect = 6e-04
 Identities = 43/218 (19%), Positives = 86/218 (39%), Gaps = 35/218 (16%)

Query: 86  LRKSLSKAVEEKTIAKEKLVELVNIQQRYTEEANHYISERLNSLDDSLGKASHEEKLSYI 145
           L K L    E +  +K    +L  ++++ TE+      + L S  D++      +K +  
Sbjct: 24  LNKRLGLGQEPQVASKSTAEQLSLLEEQLTEQ------QALQSSFDAIIHQYQSQKQALT 77

Query: 146 TTYRELQQYLDVTYHSSAENIGWLSSLDI-DTRDVEKTLRERINQRLR--------LLSA 196
              +E    L+   +        LS L + + ++ E  L  ++N+ ++        +  A
Sbjct: 78  QQLKEAATPLEYNPNQDLSQQASLSYLRLSELKETEANLATQVNELIKRQQQLPSLISQA 137

Query: 197 SLEYLKQQISVINN-------------QIKSSPESEKANLQLALLFTQQRLDIVTKSLRS 243
           +L   K + +  N+             Q  S+ ESE A+ Q  +  TQQ+L +V   L  
Sbjct: 138 NLTLAKHKQATSNDNQPLSEMQRRVYVQSLSTLESELASSQKQIALTQQQLALVRSQLVQ 197

Query: 244 VVGIADQFEIETADYKRQ-------IFQVTGSITQDLL 274
              + ++     A+ + +         Q+  SIT D +
Sbjct: 198 QEALIERLNGAIAEQRHKATAATIAASQIETSITDDAI 235