Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella loihica PV-4

 Score =  418 bits (1074), Expect = e-121
 Identities = 209/514 (40%), Positives = 322/514 (62%), Gaps = 4/514 (0%)

Query: 41  ESPSELENEIDQIKQYISELSVTLKQATGDVRDALQLQLFQKNAELRKSLSKAVEEKTIA 100
           ++P  L  E+ Q++Q I      L  A G+++  ++ ++ +   +L       + ++ + 
Sbjct: 27  QTPQPL-TELTQLQQTIDSDIAKLGNANGEMKQFIEYRIKEHANQLHDKFKLMMNQQPLD 85

Query: 101 KEKLVELVNIQQRYTEEANHYISERLNSLDDSLGKASHEEKLSYITTYRELQQYLDVTYH 160
           K  L+ L+     + ++   Y +  ++     LG + ++  + Y    R+ Q+  D    
Sbjct: 86  KANLLPLLQKHLAFIDKVADYYAADIDQFKQQLG-SDNDTGVMYKLAMRDRQR--DEILS 142

Query: 161 SSAENIGWLSSLDIDTRDVEKTLRERINQRLRLLSASLEYLKQQISVINNQIKSSPESEK 220
           +  E + WL +L  DT+ ++  L  ++ +R  +L++ + + + ++ +  ++   + +   
Sbjct: 143 AKYETLTWLDALGEDTQAIKTQLTAQLLKRSDMLNSLVHFTQDKLKLAVDEAAKAGKDVT 202

Query: 221 ANLQLALLFTQQRLDIVTKSLRSVVGIADQFEIETADYKRQIFQVTGSITQDLLNTQVVF 280
           A     +    +RL + + SL   + + D    +T   K+ +F ++G ITQD+LN  V  
Sbjct: 203 AEQTALVTNLNERLSLTSASLSVAIELLDAMSQDTTALKQTLFSISGDITQDVLNVDVAS 262

Query: 281 SIVRHWSNSLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHL 340
           +++  W N   N    N    LF+LF+FLLIL  A    K  + +V+  V++  ++ S L
Sbjct: 263 NLLDQWWNQAKNQALDNGPGLLFKLFVFLLILFLAHLAGKAVQRIVKKMVSNSKLKFSKL 322

Query: 341 MQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMML 400
           +QDFFVS+SGK V+ +G+++ LSQ+G  L P+L GFG+AGVIIGFALQDTLSNFA+GMM+
Sbjct: 323 LQDFFVSLSGKTVFALGLMIALSQLGFELGPLLAGFGVAGVIIGFALQDTLSNFASGMMI 382

Query: 401 LIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIR 460
           LIYRP+DVGD ++A GV GKVS MSLV+TTI+T DNQ +I+PN+KIWGD I N+T E  R
Sbjct: 383 LIYRPYDVGDLINAAGVTGKVSQMSLVSTTIKTLDNQRLIIPNNKIWGDTINNITVEHQR 442

Query: 461 RVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTD 520
           RVDM FGIGY D++ KAE VL  IV  HP VLK PEP +K+H L  SS+DF+VRPWVK +
Sbjct: 443 RVDMTFGIGYGDNIEKAEQVLRGIVDEHPKVLKQPEPTVKLHLLGESSVDFVVRPWVKPE 502

Query: 521 DYWDVYWDVTKEVKLRFDREGISIPFPQQDVHLH 554
           DYWDVYWD+T+ VK+RFD+E ISIPFPQ+DVH++
Sbjct: 503 DYWDVYWDITRAVKMRFDQEDISIPFPQRDVHIY 536