Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 267 a.a., mechanosensitive ion channel family protein from Methanococcus maripaludis JJ

 Score =  184 bits (467), Expect = 4e-51
 Identities = 86/247 (34%), Positives = 145/247 (58%), Gaps = 3/247 (1%)

Query: 309 LLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLN 368
           +LIL+      ++  +++ +   +K  +I  L+ +F + +   +++V  IL+ +   G+ 
Sbjct: 21  ILILVLGYFAVRIVSSILENG--AKKSKIPELVSEFVIKLFSAILYVFVILLAVGVFGVE 78

Query: 369 LAPVLTGFGIA-GVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLV 427
             P++ G   + G+I+GF LQDTL+N  +G+ + + +P D  + V  GG+ GK+  + ++
Sbjct: 79  TGPIILGLSASLGLILGFGLQDTLTNLTSGLWIAVMKPLDKDETVQIGGITGKIVEVGIM 138

Query: 428 NTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKS 487
            T + T DN +I +PN  +WG  I N T   +RRVD+  G+ Y ++L  A +   +++  
Sbjct: 139 ATKLLTPDNVVITIPNKLVWGSPITNYTRMDLRRVDVAVGVSYGENLDNALSKALELISE 198

Query: 488 HPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGISIPFP 547
           HP VLK P P + V  L  SS+D  +R W KT DYW V  D+TK +  ++ +EGI IPFP
Sbjct: 199 HPKVLKDPAPAVVVTGLGESSVDLQLRAWTKTGDYWGVKGDLTKGIYEKYGKEGIEIPFP 258

Query: 548 QQDVHLH 554
           Q DVH+H
Sbjct: 259 QMDVHIH 265