Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 429 a.a., hypothetical small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  256 bits (655), Expect = 1e-72
 Identities = 151/426 (35%), Positives = 239/426 (56%), Gaps = 11/426 (2%)

Query: 12  LLMATSAFASDTSQENTQIETTTEITTTAESPSELENEIDQIKQYISELSVTLKQATGDV 71
           LL+    FA+D       +  TT  TT+  + +E E  +  ++  I E    L    G++
Sbjct: 15  LLINAKVFAADP------VPVTTTQTTSVSNDTEAE--LTTLQTAIKEDIARLAHYQGEL 66

Query: 72  RDALQLQLFQKNAELRKSLSKAVEEKTIAKEKLVELVNIQQRYTEEANHYISERLNSLDD 131
           R   + ++  K+ +LR  +   +++ +  K  ++ LV  Q  + ++ N Y ++ ++ L  
Sbjct: 67  RTIAEYRIQNKSLQLRNKIKTLLDDDSYDKALILPLVQEQLLFNQKINDYFNDIVSKLSQ 126

Query: 132 SLGKASHEEKLSYITTYRELQQYLDVTYHSSAENIGWLSSLDIDTRDVEKTLRERINQRL 191
            LG    E  L  I+  REL +  D  Y    E + WLS L  D    +  L + +  R 
Sbjct: 127 KLGTPDDEATLLEISK-RELDK--DNNYKQRLETLDWLSQLGQDVTAEKAQLTQILLSRA 183

Query: 192 RLLSASLEYLKQQISVINNQIKSSPESEKANLQLALLFTQQRLDIVTKSLRSVVGIADQF 251
               + + Y +QQ+    N   ++ +   +     ++  + RL   + SL   + + D  
Sbjct: 184 DNFDSFVTYTQQQLQNAVNDATNAGKDATSAQTSRVIQLKDRLAQNSLSLSIDIELLDAL 243

Query: 252 EIETADYKRQIFQVTGSITQDLLNTQVVFSIVRHWSNSLVNWLASNAVQHLFQLFIFLLI 311
              TA  K+ +F ++G ITQD+L+  V  S+++ W N+  +   ++    +F+LFIF LI
Sbjct: 244 GQNTAMLKKTLFSISGDITQDVLSVDVASSLIKQWLNTAKDQAINHGPTLVFKLFIFCLI 303

Query: 312 LLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLNLAP 371
           L  A    K+ + +V + V++  +  S L+QDFF S+SGK V+ IG+L+ LSQ+G+ L P
Sbjct: 304 LFVASLVGKLVKKIVSNTVSNSKLNFSKLLQDFFTSLSGKAVFTIGLLIALSQLGIELGP 363

Query: 372 VLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNTTI 431
           +L GFGIAGVIIGFALQDTLSNFA+GMM+LIYRP+DVGD ++A GV G+VSHMSLV+TTI
Sbjct: 364 LLAGFGIAGVIIGFALQDTLSNFASGMMILIYRPYDVGDLINAAGVSGRVSHMSLVSTTI 423

Query: 432 RTFDNQ 437
           +T DNQ
Sbjct: 424 KTLDNQ 429