Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (486), Expect = 2e-53
 Identities = 95/250 (38%), Positives = 155/250 (62%), Gaps = 2/250 (0%)

Query: 304 QLFIFLLILLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLS 363
           ++   L+I    K  A V + VV   +NS+  ++   +  F  ++S  VV+V  I+  L 
Sbjct: 21  KILFALVIFFVGKYFAGVAQKVVHKLLNSR--KVDPTVVSFVANLSWAVVFVFTIIATLG 78

Query: 364 QIGLNLAPVLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSH 423
           QIG+  A ++   G AG+ +G ALQ +LSNFA+G++++++RP  VGD++ A G+ G V  
Sbjct: 79  QIGVQTASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEAAGIAGTVDE 138

Query: 424 MSLVNTTIRTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTD 483
           +++ +T +RT DN++I+ PNS I    I N +    RR+D+V  + YS DL + + VLT+
Sbjct: 139 ITIFSTKLRTPDNKVIVAPNSSIMNGTITNYSASENRRIDLVICVSYSADLAQTKKVLTE 198

Query: 484 IVKSHPAVLKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGIS 543
           I+ ++  VLK P   + +  L +SSI+F+VRPWVKT DYW   +++ +++K   D   I 
Sbjct: 199 ILDNNQYVLKEPGYTVGLSELASSSINFVVRPWVKTADYWTARFEILEQIKNALDAADIE 258

Query: 544 IPFPQQDVHL 553
           IPFPQ D+H+
Sbjct: 259 IPFPQMDIHV 268