Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella sp. ANA-3

 Score =  122 bits (305), Expect = 2e-32
 Identities = 78/289 (26%), Positives = 152/289 (52%), Gaps = 15/289 (5%)

Query: 265 VTGSITQDLLNTQVVFSIVRHWSNSLVNWLASNAVQHLFQLFIFLLILLAAKGGAKVTRT 324
           +T  + Q+L   Q V+ ++  +   LVN+    + Q L    +FLL L  A   +KV+R 
Sbjct: 2   ITPGLDQELQQLQGVYQLITEF---LVNY----SFQLLGAALVFLLGLWVA---SKVSRL 51

Query: 325 VVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLNLAPVLTGFGIAGVIIG 384
           V +     +  +I   + +F  ++   ++ V+  ++ L +IG+++ P++   G A +  G
Sbjct: 52  VAKQC---EKHQIDITLSNFVSNLVRILIIVMVAIIALGKIGISVTPMVAAIGAASLGAG 108

Query: 385 FALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNTTIRTFDNQIIIVPNS 444
            ALQ  LSN+AAG+ +++ RPF VG+ +   G  G V+ ++L  T +   + + I +PN 
Sbjct: 109 LALQGMLSNYAAGVTIIVTRPFVVGNTIEIKGESGVVTRINLGMTILTNEEGEQISIPNK 168

Query: 445 KIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSHPAVLKTPEPNIKVHTL 504
            I G+++ N    ++  V+  F + Y++D   A +++T+++  +P V +   PNI ++  
Sbjct: 169 HIVGEILHNSFSNKL--VETQFNLSYNNDPEAAISLITELLSQNPNVSQDTTPNIGINGF 226

Query: 505 NTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGISIPFPQQDVHL 553
           N   I+  VR WV T  Y+   + +   +     + GI +  P +++HL
Sbjct: 227 NAIGIEIGVRYWVPTQSYFQHKYKINLAIYNALKQAGIEMACPVREIHL 275