Pairwise Alignments

Query, 569 a.a., mechanosensitive ion channel protein MscS from Vibrio cholerae E7946 ATCC 55056

Subject, 551 a.a., MscS mechanosensitive ion channel (RefSeq) from Shewanella sp. ANA-3

 Score =  442 bits (1137), Expect = e-128
 Identities = 231/543 (42%), Positives = 336/543 (61%), Gaps = 10/543 (1%)

Query: 12  LLMATSAFASDTSQENTQIETTTEITTTAESPSELENEIDQIKQYISELSVTLKQATGDV 71
           LL++T  FA+D ++           T TA  P+E +NE+  +K  I E    L Q+ G++
Sbjct: 15  LLLSTEVFATDAAEP-------VAATQTATVPNEAQNELITLKSAIKEDIARLSQSQGEL 67

Query: 72  RDALQLQLFQKNAELRKSLSKAVEEKTIAKEKLVELVNIQQRYTEEANHYISERLNSLDD 131
           R  ++ ++  K  +LR  +   +E++   K  ++ LV  Q  +  + N Y ++ +  L  
Sbjct: 68  RTIVEYRIQNKTLQLRNKIKVLLEDENYDKAFMLALVQEQLTFNLKINDYFNDIVTKLSH 127

Query: 132 SLGKASHEEKLSYITTYRELQQYLDVTYHSSAENIGWLSSLDIDTRDVEKTLRERINQRL 191
            LG A  E  L  I+  REL +  D  Y    E + WL  +  D    +  L + +  R 
Sbjct: 128 KLGSADDESTLLEISK-RELDK--DNNYKQRLETLNWLGQMGEDVAAQKAELTQILLSRA 184

Query: 192 RLLSASLEYLKQQISVINNQIKSSPESEKANLQLALLFTQQRLDIVTKSLRSVVGIADQF 251
               + + + +QQ+    N   ++ +   A     ++  + RL + ++SL   + + D  
Sbjct: 185 DNFDSFVTFTQQQLQNAVNAATNAGKDVTAAQTSRVMQLKDRLALNSQSLSIDIDLLDAL 244

Query: 252 EIETADYKRQIFQVTGSITQDLLNTQVVFSIVRHWSNSLVNWLASNAVQHLFQLFIFLLI 311
           E  TA  K+ +F ++G ITQD+L+  V  S+V  W ++      ++    +F+LFIF +I
Sbjct: 245 EQNTASLKKTLFSISGDITQDVLSIDVASSLVEQWLHTAKEQSINHGPTLVFKLFIFCMI 304

Query: 312 LLAAKGGAKVTRTVVRSAVNSKNIRISHLMQDFFVSMSGKVVWVIGILVGLSQIGLNLAP 371
           L  A    K+ + +V + V++  +  S L+QDFF S+SGK V+ IG+L+ LSQ+G+ L P
Sbjct: 305 LFVASLAGKLAKKIVSNTVSNSKLNFSKLLQDFFTSLSGKAVFTIGVLIALSQLGIELGP 364

Query: 372 VLTGFGIAGVIIGFALQDTLSNFAAGMMLLIYRPFDVGDFVHAGGVDGKVSHMSLVNTTI 431
           +L GFGIAGVIIGFALQD+LSNFA+GMM+LIYRP+DVGD + A GV G+VSHMSLV+TTI
Sbjct: 365 LLAGFGIAGVIIGFALQDSLSNFASGMMILIYRPYDVGDLISAAGVTGRVSHMSLVSTTI 424

Query: 432 RTFDNQIIIVPNSKIWGDVIKNVTHERIRRVDMVFGIGYSDDLLKAEAVLTDIVKSHPAV 491
           +T DNQ +I+PN+KIWGD I N+T E  RRVDM FGIGY D++  AEAVL  IV++HP V
Sbjct: 425 KTLDNQRLIIPNNKIWGDTINNITAEHQRRVDMTFGIGYGDNIEHAEAVLKSIVEAHPKV 484

Query: 492 LKTPEPNIKVHTLNTSSIDFIVRPWVKTDDYWDVYWDVTKEVKLRFDREGISIPFPQQDV 551
            K P P IK+H L  SS+DFIVRPW K +DYWDVYWD+T+EVK+RFD EGISIPFPQ+DV
Sbjct: 485 QKIPAPLIKLHVLGESSVDFIVRPWAKPEDYWDVYWDITREVKMRFDAEGISIPFPQRDV 544

Query: 552 HLH 554
           H++
Sbjct: 545 HIY 547