Pairwise Alignments

Query, 408 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 388 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  170 bits (430), Expect = 8e-47
 Identities = 118/389 (30%), Positives = 186/389 (47%), Gaps = 28/389 (7%)

Query: 44  LIFLITLGFSLLAEASDNVL-----------DKVLEKLGASETVDVSKTIDWGILPGPFV 92
           ++ L  L FS +A A + ++           D++L+  GA    D SKTID   LP  + 
Sbjct: 4   ILCLSLLAFSQMAAAVEPLIETPKDMQPTWVDEILDVFGADGEFDESKTIDMSYLPTAYY 63

Query: 93  NPEQGLGIGIAAVGLYAPPTWQEGHPFSTVTITSYTSTSGSYGLGLVNRTYLNNDQWRML 152
            PE+  G+G+  VGLY           S++ + S+ S + SYG+ + N T+ N  + R+L
Sbjct: 64  TPEKKFGVGLLMVGLYKTDGAAPEEQPSSLVLNSFVSMNNSYGVEVENMTFFNGGKQRLL 123

Query: 153 IDGWISHAPSDYWGIGAKAAEQESNKTHYDAKRLQFNPSLAYELFPSTYLKVGWQWQSYR 212
           +   + +  S Y+G G      +SN   +D +   F P    ++  + ++ VG  +    
Sbjct: 124 LGLELHNEASVYYGRGIADGNIDSNHHEFDEQLYSFTPRWMTQVADNYFVGVGVDFTYAS 183

Query: 213 AIAVKK-KGDAAAE----LKPGVSSGSLIGLEYDSRDFEPNPQSGSYINLEWSDYRDRYG 267
           A    + +GD        L    SSG ++   YDSRD+  N   G    L+   Y++   
Sbjct: 184 ADKFTRVEGDIPLPSDGILPSNFSSGLVVTSIYDSRDYRLNATKGWLFQLDAGLYQN--- 240

Query: 268 SDFD-YQQWVFNLRHYQRLTPQT-------IFAMEWFNQSFTGEVPWFDHAMLGDDQRMR 319
           S++D + ++   L +Y  L+  +       + A +      +G+VPW     LG    MR
Sbjct: 241 SEYDSFAKYDLELANYIDLSTTSWLSQMPGLIAWQVQGHFTSGDVPWNMLPDLGGSSAMR 300

Query: 320 GYYQGQYRDKHFATAQFEIRHSFNARHGMVAWLGSGSTASQFADLAESEWLPTLGIGYRF 379
           GY +G+YRDK     Q E R     R+GMV W G GS A + +DL   E L + G G+RF
Sbjct: 301 GYIKGRYRDKQMMMGQVEYRLPIFQRYGMVFWGGVGSVADKVSDL-NDELLTSYGTGFRF 359

Query: 380 AFKARINVRIDLGVGKQNNGFYFQINEAF 408
             K  IN+R+D+GVG+    FY  +NE F
Sbjct: 360 KIKDNINLRLDVGVGENETNFYLNVNEVF 388