Pairwise Alignments

Query, 408 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  163 bits (413), Expect = 7e-45
 Identities = 105/376 (27%), Positives = 166/376 (44%), Gaps = 4/376 (1%)

Query: 35  QSSAMKTNTLIFLITLGFSLLAEASDNVLDKVLEKLGASETVDVSKTIDWGILPGPFVNP 94
           Q+ +M  +  I  +++  S   +       K L+    +     +K  D+ ++ GP  + 
Sbjct: 25  QTDSMGKDVPIDSVSVATSDSLQTKRGFFKKFLDYFNDANKEKKNKKFDFSVIGGPHYSS 84

Query: 95  EQGLGIGIAAVGLYAPPTWQEGHPFSTVTITSYTSTSGSYGLGLVNRTYLNNDQWRMLID 154
           +   G+G+ A GLY         P S V++    ST G Y LG+        +++R+  +
Sbjct: 85  DTKFGLGLVAAGLYRTDRNDSILPPSNVSLYGDVSTVGFYLLGVRGNHLFPQEKYRLNYN 144

Query: 155 GWISHAPSDYWGIGAKAAEQESNKTHYDAKRLQFNPSLAYELFPSTYL--KVGWQWQSYR 212
            +    PS YWG G        N++ Y   + Q      + +  S Y+     + +   R
Sbjct: 145 LYFYSFPSLYWGRGYDNGANSDNESDYKRFQAQVKVDFMFRVAKSFYIGPMAVFDYIDGR 204

Query: 213 AIAVKKKGDAAAELKPGVSSGSLIGLEYDSRDFEPNPQSGSYINLEWSDYRDRYGSDFDY 272
                +  +  +      S G  + L YDSRDF  N   G Y+ ++        G+ + +
Sbjct: 205 DFEKPELWEGMSARTTNTSLG--LSLLYDSRDFLTNAYQGYYLRIDQRFSPAFLGNKYAF 262

Query: 273 QQWVFNLRHYQRLTPQTIFAMEWFNQSFTGEVPWFDHAMLGDDQRMRGYYQGQYRDKHFA 332
                   +Y  +    + A ++      G  PW   A LG    MRGYY+G+YRDK   
Sbjct: 263 SSTELTTSYYHPVWKGGVLAGQFHTLLNYGNPPWGLMATLGSSYSMRGYYEGRYRDKCAM 322

Query: 333 TAQFEIRHSFNARHGMVAWLGSGSTASQFADLAESEWLPTLGIGYRFAFKARINVRIDLG 392
            AQ E+R     R+G+  W G+G+   +F+D      LP  G GYR+ FK R+NVR+DLG
Sbjct: 323 DAQIELRQHIWKRNGVAVWAGAGTVFPRFSDFTPKHILPNYGFGYRWEFKKRVNVRLDLG 382

Query: 393 VGKQNNGFYFQINEAF 408
            GK   GF F INEAF
Sbjct: 383 FGKHQTGFIFNINEAF 398