Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., DNA topoisomerase III (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  122 bits (306), Expect = 7e-32
 Identities = 136/523 (26%), Positives = 219/523 (41%), Gaps = 72/523 (13%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYK----RVVFNEITKNAIQQAF 159
           +++L  +A  + +ATD DREGE IA   RE++  +  RY+    R+  + + + +I++A 
Sbjct: 86  VKRLLGEAKELVIATDADREGEMIA---RELV--EHCRYRGPIRRLWLSALDEASIRKAL 140

Query: 160 K--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVARG-----LSAGRVQSVAVKLL 212
              +PG    +  ++   R   D ++G  +S L      +      L  GRVQ+  ++L+
Sbjct: 141 AALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLV 200

Query: 213 VEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALA---AVAAL 269
           V+R+R I  FVP  +W I+               A  D    +     +ALA   A A  
Sbjct: 201 VDRDRSIADFVPVAYWAIDVQLSHEGMAFTAQWRADPDACDDQERCLNQALARDAAQAMR 260

Query: 270 NKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYM 328
           N A     K   +        PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY 
Sbjct: 261 NAATARTLKVRTERLREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQSLYETYKLITYP 320

Query: 329 RTDSTNLSAEAVENLRGYITKHYGEAYLPSQPNVYGSKQNAQ-------------EAHEA 375
           R+D   L           +      A   + P++   +++ Q              AH  
Sbjct: 321 RSDCGFLPLSQHSEAPAILA-----ALAQADPSLAPLREHLQPQRKSRAWNDAKVSAHHG 375

Query: 376 IRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGR 435
           I P   T  A +L+ +      +Y LI  +++A  +   +YD T      A   L+A G+
Sbjct: 376 IIP---TAAAKNLDKLAGKQRAVYTLIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGK 432

Query: 436 ILKFDGWTR----VQRPLGKNE---DQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAA 488
            +   GW R       P    E    Q LP +  G    +  + PK  +T+PP  +TE  
Sbjct: 433 QIVEPGWKRALPEALAPAKGREAPAPQTLPALAEGRDCTVDEVKPKDLWTQPPKPFTEGD 492

Query: 489 LVKEL-----------------EKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGE 531
           L+K +                 +  GIG  +T ASII  + DRGY+  + +   A     
Sbjct: 493 LIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKNGKALSATPAAF 552

Query: 532 IVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEF 574
            + D +     D      TA  E+ LD +  GE++    L+EF
Sbjct: 553 SLIDAVPRAIAD---PGTTAIWEQALDMVQSGEMS----LEEF 588