Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (277), Expect = 1e-28
 Identities = 109/369 (29%), Positives = 167/369 (45%), Gaps = 39/369 (10%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKR--YKRVVFNEITKNAIQQAFKQ 161
           +++L      + +ATD DREGE IA   RE++   + R   +R+  + +   +I++A  Q
Sbjct: 109 VKQLLAQTSELVIATDADREGEMIA---REVLELCQYRGSIQRLWLSALNDASIRKALSQ 165

Query: 162 --PGELNMDGVNAQQARRFMDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVKLLVE 214
               E      ++  AR   D ++G  +S    LL ++      LS GRVQ+  ++L+V+
Sbjct: 166 LRQAEETQSLYHSALARSRADWLIGMNMSRLFTLLGRQAGLNGVLSVGRVQTPTLRLVVD 225

Query: 215 REREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGL---AFKPVNETEALAAVAALNK 271
           R+REI+ FVP  +W I    L    Q F    A  D     A + + +  AL A  +   
Sbjct: 226 RDREIERFVPRPYWVIQVK-LEVLGQAFTAQWAAPDSATDEAGRCIRQAIALQAQQSFKA 284

Query: 272 AQY-EVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYMR 329
               +V + E + T   P  PF  +TLQ+  S RLGYGV++T+ +AQ LYE     TY R
Sbjct: 285 TGVAQVLEVETQRTREAPPLPFDLNTLQEVCSRRLGYGVQETLDIAQSLYETHKATTYPR 344

Query: 330 TDSTNLSAEAVENLRGYITKHYGEAYLPSQPNVYGSKQNAQ-------------EAHEAI 376
           TDS  L    +             A + S P V    Q+                AH  I
Sbjct: 345 TDSGYLPESMLLEAEAVFA-----ALIKSDPGVGPLVQSVDFTLRSRAWNDSQVSAHHGI 399

Query: 377 RPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRI 436
            P   T+   D   +      +Y LI  +++A  + P +YD T V +    + LKA G+ 
Sbjct: 400 IP---TLEPFDRLALSERECAVYELIRARYLAQFLPPHEYDRTAVQLTCGNHVLKAHGKH 456

Query: 437 LKFDGWTRV 445
           +   GW RV
Sbjct: 457 VVESGWHRV 465