Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., DNA topoisomerase III from Pseudomonas fluorescens FW300-N2E3

 Score =  130 bits (326), Expect = 3e-34
 Identities = 146/542 (26%), Positives = 234/542 (43%), Gaps = 79/542 (14%)

Query: 93  ILPGKEKVVAE---------LQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRY- 142
           I+P K K++ +         +++L  +AD + +ATD DREGE IA   RE++  +  RY 
Sbjct: 66  IIPEKWKMLVKPKTASQFKAVKRLLGEADELVIATDADREGEMIA---RELV--EHCRYR 120

Query: 143 ---KRVVFNEITKNAIQQAFK--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVAR 197
              KR+  + +   +I++A    +PG       ++   R   D ++G  +S L      +
Sbjct: 121 GPIKRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ 180

Query: 198 G-----LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTL------TADKQDFRLLV 246
                 L  GRVQ+  ++L+V+R+R I  FVP  +W I+   L      TA  +    + 
Sbjct: 181 SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVPYWAIDVQLLHDNIPFTAQWRAAPEVC 240

Query: 247 AQKDGLAFKPVNETEAL-AAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRL 305
            + D    + +N+  A  AA+A  N A   + K   +        PF   TLQ+  S +L
Sbjct: 241 DEHD----RCLNQALAQEAAMAMRNAASARLVKLRTERVREAAPLPFDLGTLQEICSKKL 296

Query: 306 GYGVKKTMMLAQRLYEA-GYITYMRTD------STNLSAEAVENLRGYITKHYGEAYLPS 358
           G G ++T+ +AQ LYE    ITY R+D      S +  A  +    G      GE     
Sbjct: 297 GLGAQETLDVAQALYETHKVITYPRSDCGYLPLSQHSEAPGILAALGRADPSLGELLKHL 356

Query: 359 QPNVYGSKQNAQE--AHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQY 416
           +P       N  +  AH  I P   T  A +LE +      +Y LI  +++A  +   +Y
Sbjct: 357 EPQRRSRAWNDAKVSAHHGIIP---TAAAKNLERLTGKHRAVYTLIRARYLAQFLPNHEY 413

Query: 417 DSTTVSVKAAEYTLKAKGRILKFDGWTR----VQRPLGKNE---DQILPPVKVGDSLKLV 469
           D T      A   L+A G+++   GW R       P    E    Q LP +  G    + 
Sbjct: 414 DRTQADFDCAGQALRAVGKLIVEPGWKRALPEALAPAKGREAPAPQTLPALAEGCDYAVA 473

Query: 470 SLDPKQHFTKPPARYTEAALVKEL-----------------EKRGIGRPSTYASIISTIQ 512
           ++  K  +T+PP  +TE  L+K +                 +  GIG  +T A II  + 
Sbjct: 474 NVTLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLL 533

Query: 513 DRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLD 572
           DRGY+  + +   A      + D +     D      TA  E+ LD +  GE++    L+
Sbjct: 534 DRGYLIKNGKALAATPPAFSLIDAVPRAIAD---PGTTAIWEQALDMVQSGEMS----LE 586

Query: 573 EF 574
           EF
Sbjct: 587 EF 588