Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Pseudomonas stutzeri RCH2

 Score =  120 bits (302), Expect = 2e-31
 Identities = 144/555 (25%), Positives = 233/555 (41%), Gaps = 76/555 (13%)

Query: 82  DP-YHGWQ-ANYQILPGKEKVVAE---------LQKLAKDADSVYLATDLDREGEAIAWH 130
           DP Y  W  A+  I+P + K++ +         +++L  +   + +ATD DREGE IA  
Sbjct: 53  DPRYKRWVLADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIA-- 110

Query: 131 LREIIGGDEKRYK----RVVFNEITKNAIQQAFK--QPGELNMDGVNAQQARRFMDRVVG 184
            RE++  +  RY+    R+  + +   +I++A    +PG    +  +A   R   D ++G
Sbjct: 111 -RELV--EHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIG 167

Query: 185 FMVSPLLWKKVARG-----LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADK 239
             +S L      +      L  GRVQ+  ++L+V+R+R I  F+P  FW I+   L AD 
Sbjct: 168 MNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQ-LLADG 226

Query: 240 QDFRLLVAQKDGLA---FKPVNETEALAAVAAL-NKAQYEVCKREDKPTTSKPSAPFITS 295
             F       D       + +++  A  A  A+ N A   + K + +        PF   
Sbjct: 227 TAFTAQWQAPDDYCDDQGRCLDQARAQQAAEAMRNAACARLLKLKTERQREAAPLPFDLG 286

Query: 296 TLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAEAVENLRGYIT--KHYG 352
           TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L        R  +       
Sbjct: 287 TLQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALAQSD 346

Query: 353 EAYLPSQPNVYGSKQNAQ------EAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQF 406
                 +P++  S+++         AH  I P   T     LE +      +Y LI  ++
Sbjct: 347 PTLAALEPHLDLSRRSRAWNDAKVGAHHGIIP---TAAVRGLERLSGRPRAVYELIRARY 403

Query: 407 VACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRVQ----RPLGKNED----QILP 458
           +A  +   +YD T      A   L+A G+ +   GW R       P   N +    Q LP
Sbjct: 404 LAQFLPNHEYDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPARGNREAPAPQSLP 463

Query: 459 PVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKEL-----------------EKRGIGRP 501
            ++ G    +  ++ K   T PP  +TE  L+K +                 +  GIG  
Sbjct: 464 TLQQGQDYAVGEINLKDQQTHPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTE 523

Query: 502 STYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIA 561
           +T A II  + DRGY+    +   A      + D +     D      TA  E+ LD + 
Sbjct: 524 ATRAGIIQGLLDRGYLLRQGKALAATPAAFSLIDAVPRPIAD---PGTTAIWEQALDMVQ 580

Query: 562 EGEVNWTAVLDEFFA 576
            GE+     L+EF A
Sbjct: 581 SGEM----PLEEFVA 591