Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 959 a.a., DNA topoisomerase I from Azospirillum brasilense Sp245

 Score =  462 bits (1188), Expect = e-134
 Identities = 272/671 (40%), Positives = 386/671 (57%), Gaps = 81/671 (12%)

Query: 2   GKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTT 61
           G ++VIVESPAKAKTINKYLG D+ V +S GHVRDLP                       
Sbjct: 3   GSNVVIVESPAKAKTINKYLGSDYTVVASFGHVRDLPA---------------------- 40

Query: 62  DKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLD 121
                          +   V P   +  ++++    ++ + E+ K  K A+ VYLATD D
Sbjct: 41  ---------------RDGSVRPDEDFAMDWELGDRSKRHIDEIAKAVKGAERVYLATDPD 85

Query: 122 REGEAIAWHLREIIGG----DEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARR 177
           REGEAIAWHL E++      D+ + +R+ FNEITK+A+Q A + P +++ + V+A  ARR
Sbjct: 86  REGEAIAWHLSELLREKRLIDDSKVQRITFNEITKSAVQAALEAPRDVSRELVDAYLARR 145

Query: 178 FMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTA 237
            +D +VGF +SP+LW+K+    SAGRVQSVA++L+ ERE EI+ F P+E+W I     T 
Sbjct: 146 ALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIEVFKPQEYWTIEVGFATP 205

Query: 238 DKQDFRLLVAQKDGLAFK----PVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFI 293
               F   + Q DG        P  E  A AAVA ++   + V   E K +   PS PF 
Sbjct: 206 GGASFTAQLTQLDGKRLDKFALPAREA-AEAAVARISPQAFSVATVERKQSRRNPSPPFT 264

Query: 294 TSTLQQAASTRLGYGVKKTMMLAQRLYE--------AGYITYMRTDSTNLSAEAVENLRG 345
           TSTLQQ AS +LG+G  +TM  AQRLYE         G ITYMRTD  +LS EA+E  R 
Sbjct: 265 TSTLQQEASRKLGFGATRTMRTAQRLYEGVDIGGETVGLITYMRTDGVSLSQEAIEGARN 324

Query: 346 YITKHYGEAYLPSQPNVY-GSKQNAQEAHEAIRPSDVTVTADDLEG-MEADAHKLYALIW 403
            I  H+GE Y+P+QP VY  + +NAQEAHEAIRP+D+    +++   +E D  +LY LIW
Sbjct: 325 LIGSHWGERYVPAQPRVYKTAAKNAQEAHEAIRPTDLFRRPEEVSSYLEGDELRLYELIW 384

Query: 404 NQFVACQMTPAQYDSTTVSV--KAAEYTLKAKGRILKFDGWTRVQR------PLGKNEDQ 455
            + +A QM  A  D   V +   + +  L+A G ++ FDG+ +V +          ++++
Sbjct: 385 KRTLASQMESAVLDQVAVDIASPSKDVVLRATGSVVVFDGFLKVYQEDRDDGAADDDQER 444

Query: 456 ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRG 515
            LP ++ GD+L    + P+QHFT+PP RYTEA+LVK+LE+ GIGRPSTYASI+  +QDR 
Sbjct: 445 RLPAMEQGDALARGDISPEQHFTQPPPRYTEASLVKKLEELGIGRPSTYASILQVLQDRN 504

Query: 516 YVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFF 575
           YV++D+RRF  E  G +VT  L   F+  + Y+FTA +E KLD+I++G ++W  VL +F+
Sbjct: 505 YVRLDKRRFIPEDRGRLVTAFLKNFFNRYVEYNFTADLENKLDEISDGRIDWKTVLRDFW 564

Query: 576 ------ADFSRDLETAEQDESLGGMKPNHIVMTNI----------LCPTCSR-PMGIRTA 618
                  D ++DL   +   +L      H   TN           +CP CS+  +G++  
Sbjct: 565 RAFHVAVDGTKDLTITQVLTTLDEELGPHFFPTNANSDSPGHDPRVCPVCSQGRLGLKLG 624

Query: 619 STGVFLGCSGY 629
             G F+GCS Y
Sbjct: 625 KMGAFIGCSRY 635