Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

 Score =  117 bits (293), Expect = 2e-30
 Identities = 136/520 (26%), Positives = 213/520 (40%), Gaps = 62/520 (11%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYK----RVVFNEITKNAIQQAF 159
           +++L  +A  + +ATD DREGE IA   RE+I  +  RY+    R+  + +   +I++A 
Sbjct: 86  VKRLLGEATELVIATDADREGEMIA---RELI--EHCRYRGPIQRLWLSALDDASIRKAL 140

Query: 160 K--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVARG-----LSAGRVQSVAVKLL 212
              +PG       ++   R   D ++G  +S L      +      L  GRVQ+  ++L+
Sbjct: 141 AALKPGADTFSLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLV 200

Query: 213 VEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEAL---AAVAAL 269
           V+R+R I  FVP  +W I+   L  ++       A  D    +     +AL   AA A  
Sbjct: 201 VDRDRSIANFVPAPYWAIDVRLLHDNQAFIAQWRAPSDACDDQDRCLNQALAQQAAQAMR 260

Query: 270 NKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYM 328
             A   + K   +        PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY 
Sbjct: 261 AAASARLVKLRTERIREAAPLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYP 320

Query: 329 RTDSTNLSAEAVENLRGYITKHYG--------EAYLPSQPNVYGSKQNAQEAHEAIRPSD 380
           R+D   L         G I               +L  Q        +   AH  I P  
Sbjct: 321 RSDCGYLPNSQHGEAAGIIAALCKADPALANLSPHLDPQRRSRAWNDSKVTAHHGIIP-- 378

Query: 381 VTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFD 440
            T     +E +      +Y LI  +++A  +   +YD T      A + L+A G+ +   
Sbjct: 379 -TAAVRGVERLSGKPRAVYTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEP 437

Query: 441 GWTRVQ----RPLGKNE---DQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKEL 493
           GW R       P    E    Q LP +  G    +  +  K  +T+PP  +TE  L+K +
Sbjct: 438 GWKRAMPEALAPAKGREAPAPQPLPALFQGCECAVAEVILKDLWTQPPKPFTEGDLIKAM 497

Query: 494 -----------------EKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDR 536
                            +  GIG  +T A II  + DRGY+    +   A      + D 
Sbjct: 498 KNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLLDRGYLTKQGKSLCAAPAAFSLIDA 557

Query: 537 LDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFA 576
           +     D      TA  E+ LD +  GE++    L+EF A
Sbjct: 558 VPRAIAD---PGTTAIWEQALDMVQSGEMS----LEEFVA 590