Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

 Score =  159 bits (401), Expect = 7e-43
 Identities = 169/609 (27%), Positives = 255/609 (41%), Gaps = 79/609 (12%)

Query: 93  ILPGKEKVVAE---------LQKLAKDADSVYLATDLDREGEAIAWHLREIIG--GDEKR 141
           ILP + KV+ +         +++L K A  + +ATD DREGE IA  L E  G  G  +R
Sbjct: 66  ILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGPIQR 125

Query: 142 YKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVARG--- 198
                 NE +        KQ  E     ++A  AR   D ++G   S L      +    
Sbjct: 126 LWLSALNEASIRQALNTVKQGSETYPLYLSAL-ARSRADWLIGMNFSRLFTLLGRQAGYT 184

Query: 199 --LSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVA-----QKDG 251
             LS GRVQ+  ++L+V+R+R+I  F+P+ FW +     TA +      VA      ++G
Sbjct: 185 GVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEEG 244

Query: 252 LAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPS-APFITSTLQQAASTRLGYGVK 310
              + +++  A AA+AAL  +Q       D      P+  PF  STLQ+  S + G GV+
Sbjct: 245 ---RCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQ 301

Query: 311 KTMMLAQRLYE-----------AGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQ 359
           +T+ +AQ LYE            GY+     D   +  +A+      I K   +   P Q
Sbjct: 302 ETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTL-QLIDPEQ 360

Query: 360 PNVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDST 419
            +   + +     H  I P   T+   +L  M     K+Y LI   F+A  +   +YD T
Sbjct: 361 RSRAWNDKKITGPHHGIIP---TLEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRT 417

Query: 420 TVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNE-------DQILPPVKVGDSLKLVSLD 472
             + +     L+A G+ +   GW  +     + E        QILP +++G    +  L 
Sbjct: 418 VATFECNAVLLQAVGKRIVIPGWKVLFSASSEEEANDSGGRSQILPVLQIGTRCDVQDLH 477

Query: 473 PKQHFTKPPARYTEAALVKEL-----------------EKRGIGRPSTYASIISTIQDRG 515
            K   T+PP  YTE  L+K +                 E  GIG  +T A  I  + DRG
Sbjct: 478 LKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRG 537

Query: 516 YVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFF 575
            +    ++  A +  E     +D     + +   TA  E+ L  I +G    T  LD+F 
Sbjct: 538 SL---IKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQG----TLTLDDFI 590

Query: 576 ADFSRDLETAEQDESLGGMKPNHIVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKE 635
           A  S  +      E   G   +  V     CP CS     R  S+GVF  CS Y      
Sbjct: 591 ARQSSWI--TRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRY-----P 643

Query: 636 RCKTTINLG 644
            CK T+N+G
Sbjct: 644 ECKGTVNIG 652



 Score = 26.2 bits (56), Expect = 0.007
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 762 VHFPELP-CENSDAYFVLRDGASGLFFAASNFPKSRET 798
           +  PE P C    A    R G+SG+F+A S +P+ + T
Sbjct: 611 IKVPEGPKCPLCSAKTSQRKGSSGVFWACSRYPECKGT 648