Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., DNA topoisomerase I from Synechococcus elongatus PCC 7942

 Score =  405 bits (1040), Expect = e-117
 Identities = 252/597 (42%), Positives = 348/597 (58%), Gaps = 50/597 (8%)

Query: 5   LVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTDKE 64
           LVIVESP KA+TI  YL KD+ V++S+GHVRDLP +     PT                 
Sbjct: 4   LVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASDI-PT----------------- 45

Query: 65  QQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREG 124
           + K EK        +GVD  + +   Y +   K+K+V  L+   KDAD + LATD DREG
Sbjct: 46  ELKGEKW-----SNLGVDVENNFAPLYIVPKDKKKIVKTLKDALKDADELILATDEDREG 100

Query: 125 EAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMDRVVG 184
           E+I+WHL +++       KR+VF+EIT+ AIQ A K   +++   V+AQ+ RR +DR+VG
Sbjct: 101 ESISWHLLQLLQ-PRVPTKRMVFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVG 159

Query: 185 FMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINAD-TLTADKQDFR 243
           + +SPLLWKK+A GLSAGRVQSVAV+LLV+RER  +AF    +WD+ A  T+ A + + +
Sbjct: 160 YTLSPLLWKKIAWGLSAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLTVEAGQFEAK 219

Query: 244 L--LVAQK---------------DGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTS 286
           L  L  Q+                G     +++ EA A    L    ++V   E+KPTT 
Sbjct: 220 LWTLAGQRLATGNDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLEEKPTTR 279

Query: 287 KPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGY 346
           KP+ PF TSTLQQ ++ +L    ++TM +AQ LYE G+ITYMRTDS +LS +A+E  R  
Sbjct: 280 KPAPPFTTSTLQQESNRKLRLSARETMRVAQSLYERGFITYMRTDSVHLSQQAIEAARSC 339

Query: 347 ITKHYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQ 405
           + + YG+ YL  QP  + +K +NAQEAHEAIRP+  T       G+      LY LIW +
Sbjct: 340 VEQMYGKNYLSPQPRQFTTKSKNAQEAHEAIRPAGNTFRLPQETGLSGAEFALYDLIWKR 399

Query: 406 FVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRV-----QRPLGKNEDQ--ILP 458
            +A QM  A+    +V ++      +A G+ + F G+ R        P    ED+  +LP
Sbjct: 400 TIASQMAEARQTMLSVLLEVDNAEFRASGKRIDFPGFFRAYVEGSDDPDAALEDREILLP 459

Query: 459 PVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVK 518
            +KVGD      L    H T+PPARYTEA+LVK LE  GIGRPSTYASII TI DRGY +
Sbjct: 460 ALKVGDRPTCQELAAIGHETQPPARYTEASLVKMLENEGIGRPSTYASIIGTIVDRGYAQ 519

Query: 519 VDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFF 575
           +             VT  L+++F DL++  F+ARME+ LD I+ GEV+W   L +F+
Sbjct: 520 LVSNTLTPTFTAFAVTALLEQHFPDLVDTSFSARMEQSLDDISNGEVDWLPYLSQFY 576