Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score = 81.3 bits (199), Expect = 2e-19
 Identities = 131/572 (22%), Positives = 234/572 (40%), Gaps = 81/572 (14%)

Query: 84  YHGWQ-ANYQILPGKEKV---------VAELQKLAKDADSVYLATDLDREGEAIAWHL-- 131
           Y  WQ A+  I+P + K+         +A +++L K A S+  A D DREG+ +   +  
Sbjct: 82  YKQWQLAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVIS 141

Query: 132 -REIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGV---NAQQARRFMDRVVGFMV 187
             ++        +R++ +++  +A+++A  Q    N + V    +  AR   D + G  +
Sbjct: 142 HAKVSASKLASTQRLLISDLNPDAVRRALGQLRS-NKEFVPLATSALARSRADWLYGLNM 200

Query: 188 S---PLLWKKV--ARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDF 242
           +    L  +KV  A  LS GRVQ+  + L+V R+ +I+ F P++ +++ A  +T DK + 
Sbjct: 201 TRAYTLQGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAH-ITTDKGE- 258

Query: 243 RLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPT-------TSKPSAP---F 292
                 +   A +P  + E    V +   A+  V +   KP          K  AP   +
Sbjct: 259 SFCAKWQPSEACQPYMDEE--GRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQAPPLLY 316

Query: 293 ITSTLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAE---AVENLRGYIT 348
             S LQ   + R G   K+ +  AQ LYE    ITY R+DS +L  E    V ++   ++
Sbjct: 317 SLSALQIDCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVS 376

Query: 349 KHYGEAY--LPSQPNVYGSK---QNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIW 403
            +  E     PS      SK    +  +AH AI P+        L   E    +LY  I 
Sbjct: 377 ANAPELLEGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRE---RQLYLHIA 433

Query: 404 NQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQI------- 456
            Q++A          T + +     +  A+  + +  GW  + +     +D+        
Sbjct: 434 RQYLAQFYPNRLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQETD 493

Query: 457 ------LPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKEL----------------- 493
                 LP +  GD  +    +     T+PP  +T+A L+  +                 
Sbjct: 494 ASQKTPLPALNKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILK 553

Query: 494 EKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARM 553
           +  G+G  +T A II  +  RG++    +   A + G  +   L E        D TA  
Sbjct: 554 DTDGLGTEATRAGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPE---VATTADMTALW 610

Query: 554 EEKLDQIAEGEVNWTAVLDEFFADFSRDLETA 585
           E +L  I + ++++   +     +  + +E A
Sbjct: 611 ERQLSDICQRQLSYKGFMTPLVLELEKLIEQA 642