Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 45.4 bits (106), Expect = 3e-09
 Identities = 36/151 (23%), Positives = 56/151 (37%), Gaps = 30/151 (19%)

Query: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVET 659
           V+   +CP C   + +++   G+F+GC+ Y  P     +       EE V          
Sbjct: 65  VIEGSVCPECGHELAVKSGRFGIFIGCTQY--PECHHIEKPDQAAPEEAV---------- 112

Query: 660 AALRAKKRCPICET-AMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
                   CP+C+T  MD       +  + C   P C+ F+V         Y      C 
Sbjct: 113 -------ACPVCQTGVMDHRTNRYGKGFYACSCYPKCK-FLV--------NYPPVAEACP 156

Query: 719 KCGSD-MVLKNGRFGKYMGCTNDACKNTRKI 748
            CG   +V + G  G  + C N  CK  R +
Sbjct: 157 DCGFGLLVQRKGAGGTRLECPNKPCKYKRPL 187



 Score = 44.3 bits (103), Expect = 6e-09
 Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 14/142 (9%)

Query: 658 ETAALRAKKRCPICETAMDAYLIDDKRKLHV-CGNNPNCEGF--IVEEGEFKVKGYEGPT 714
           E A  R  + CP C + +       K    V C N PNC+    +V+    + +  EG  
Sbjct: 13  EHALEREFELCPECGSELSVR--HSKHGSFVGCNNYPNCQYTRPLVQHESIETQVIEGSV 70

Query: 715 VECDKCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDA 774
             C +CG ++ +K+GRFG ++GCT         I K  + AP  EE V  P       D 
Sbjct: 71  --CPECGHELAVKSGRFGIFIGCTQ--YPECHHIEKPDQAAP--EEAVACPVCQTGVMD- 123

Query: 775 YFVLRDGASGLFFAASNFPKSR 796
           +   R G    F+A S +PK +
Sbjct: 124 HRTNRYGKG--FYACSCYPKCK 143