Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 915 a.a., DNA topoisomerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  461 bits (1185), Expect = e-133
 Identities = 277/688 (40%), Positives = 393/688 (57%), Gaps = 86/688 (12%)

Query: 5   LVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTDKE 64
           +V+VESPAKAKTINKYLGKD++V +S GH+RDLP                          
Sbjct: 3   VVVVESPAKAKTINKYLGKDYVVLASYGHIRDLPP------------------------- 37

Query: 65  QQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREG 124
                       K   V P  G+  +++I    EK V ++ +  K AD + LATD DREG
Sbjct: 38  ------------KDGSVRPDEGFAMDWEIDAKSEKHVKDITQALKSADGLLLATDPDREG 85

Query: 125 EAIAWHLREIIGGDE----KRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           EAI+WH+R+++   +    K+ +R+ FN IT++A+++A + P +L+   V A  ARR +D
Sbjct: 86  EAISWHVRDVLEKRKALVGKQVQRITFNAITRSAVEEALRNPRDLDTPLVEAYLARRALD 145

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
            +VGF +SP+LW+K+    SAGRVQSVA++L+ ERE+E++ FV  E+W ++A   +   Q
Sbjct: 146 YLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICEREQEVERFVSREYWTVDAILASPQGQ 205

Query: 241 DFRLLVAQKDGLA---FKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTL 297
            FR  ++Q DG     F   +ET ALAA+  +  A   V   E K     P+APF TST+
Sbjct: 206 IFRARLSQLDGQKLDKFGLPDETTALAALERIKAATLRVESVERKQARRNPAAPFTTSTI 265

Query: 298 QQAASTRLGYGVKKTMMLAQRLYEA--------GYITYMRTDSTNLSAEAVENLRGYITK 349
           QQ AS +L +  ++TM +AQ+LYE         G ITYMRTD  +++ EAV   R  I  
Sbjct: 266 QQEASRKLYFSARQTMQVAQKLYEGVDLGGETVGLITYMRTDGVSIAPEAVFATRDLIGA 325

Query: 350 HYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDLEG-MEADAHKLYALIWNQFV 407
            +G AYLP QP VY +K +NAQEAHEAIRP+DV  T   +   + A+  KLY L+W + V
Sbjct: 326 EFGAAYLPEQPRVYKTKAKNAQEAHEAIRPTDVARTPQSVAPYLTAEQRKLYELVWKRTV 385

Query: 408 ACQMTPAQYDSTTVSVK--AAEYTLKAKGRILKFDGWTRVQRP------------LGKNE 453
           A QM  A  D   V +    A+  L A G +++FDG+ +V R              G++E
Sbjct: 386 ASQMASAILDQVAVDIADPEAKVVLHATGSVIQFDGFLKVYREDFDDRPESSPDGAGEDE 445

Query: 454 DQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQD 513
           +++LPP++ GD +K   +   QHFT+PP RYTEA+LVK +E+ GIGRPSTYASI+S +QD
Sbjct: 446 NRLLPPLREGDGVKREDVKADQHFTQPPPRYTEASLVKRMEELGIGRPSTYASILSVLQD 505

Query: 514 RGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDE 573
           R YV++D RRF  E  G +VT  L+  F   + Y FTA +E +LD+I++G++ W  VL+ 
Sbjct: 506 REYVRLDARRFIPEDRGRLVTAFLENFFSRYVQYSFTADLENQLDEISDGKLGWKTVLER 565

Query: 574 FFADFSRDLE---TAEQDESLGGMKPN---HIV------MTNILCPTCSR-PMGIRTAST 620
           F+ DF   +E   T    E L  +      H+           +CP CS   +G+R    
Sbjct: 566 FWMDFKAAIEGTATLRVSEVLDALDKELGPHLFPQAEDGHDPRVCPVCSAGRLGLRIGKF 625

Query: 621 GVFLGCSGYGLPPKERCKTTINLGDEEG 648
           G F+GCS Y       CK T  L  +EG
Sbjct: 626 GAFVGCSNY-----PDCKFTRPLVTKEG 648



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 717 CDKCGSDMV-LKNGRFGKYMGCTN-DACKNTRKIL-KNGE 753
           C  C +  + L+ G+FG ++GC+N   CK TR ++ K GE
Sbjct: 610 CPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTRPLVTKEGE 649



 Score = 26.2 bits (56), Expect = 0.010
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 757 PKEEPVHFPELPCENSDAYFVLRDGASGLFFAASNFPKSRETRAPLV 803
           P+ E  H P +    S     LR G  G F   SN+P  + TR PLV
Sbjct: 599 PQAEDGHDPRVCPVCSAGRLGLRIGKFGAFVGCSNYPDCKFTR-PLV 644