Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 911 a.a., type I DNA topoisomerase from Rhodopseudomonas palustris CGA009

 Score =  427 bits (1098), Expect = e-123
 Identities = 263/687 (38%), Positives = 382/687 (55%), Gaps = 78/687 (11%)

Query: 4   SLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTDK 63
           +LVIVESPAKAKTINKYLG  + V +S GHVRDLP                         
Sbjct: 2   NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPA------------------------ 37

Query: 64  EQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDRE 123
                        K   VDP   +Q  +++ P     + ++ K  K AD + LATD DRE
Sbjct: 38  -------------KNGSVDPDADFQMIWEVDPKAASRLNDIAKALKGADKLILATDPDRE 84

Query: 124 GEAIAWHLREII----GGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFM 179
           GEAI+WH+ E++       +++ +RVVFN ITK ++  A K P +++   V+A  ARR +
Sbjct: 85  GEAISWHVLEVMKQKRALKDQQVERVVFNAITKQSVTDAMKHPRQIDGALVDAYMARRAL 144

Query: 180 DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADK 239
           D +VGF +SP+LW+K+    SAGRVQSVA++L+ +RE EI+ FVP E+W + A   T   
Sbjct: 145 DYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRETEIEKFVPREYWSLIATMATPRG 204

Query: 240 QDFRLLVAQKDGLAFKPVN---ETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITST 296
           + F   +   DG   + ++     EA     A+  A + V   E KP    P APF TST
Sbjct: 205 ETFEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAANFRVATVEAKPARRNPYAPFTTST 264

Query: 297 LQQAASTRLGYGVKKTMMLAQRLYE--------AGYITYMRTDSTNLSAEAVENLRGYIT 348
           LQQ AS +LG+    TM +AQRLYE         G ITYMRTD   + + A+   R  I 
Sbjct: 265 LQQEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGLITYMRTDGVQIDSSAITQARKVIA 324

Query: 349 KHYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDL-EGMEADAHKLYALIWNQF 406
           + +G AY+P  P  Y +K +NAQEAHEAIRP+D++    D+   +++D  +LY LIW + 
Sbjct: 325 EDFGNAYVPDAPRQYTAKAKNAQEAHEAIRPTDLSRRPSDVSRNLDSDQARLYELIWIRT 384

Query: 407 VACQMTPAQYDSTTVSVKAAE----YTLKAKGRILKFDGWTRVQRPLGKNED------QI 456
           VA QM  A+ + TTV ++A        L+A G+++KFDG+    +  G+++D      + 
Sbjct: 385 VASQMESAELERTTVDIEAKAGSRVLELRATGQVVKFDGFLAAYQE-GRDDDSEDEDSRR 443

Query: 457 LPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGY 516
           LP +   ++LK  +L   QHFT+PP R++EA+LVK +E+ GIGRPSTYASI+  ++DRGY
Sbjct: 444 LPAMSENEALKREALAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGY 503

Query: 517 VKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFA 576
           V+++++R   E  G +V   L+  F   + YDFTA +EE LD+I+  EV+W  VL +F+ 
Sbjct: 504 VRLEKKRLHGEDKGRVVVAFLESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWR 563

Query: 577 DF------SRDLETAEQDESLGGMKPNHIVMTN------ILCPTC-SRPMGIRTASTGVF 623
           DF       +DL  A+  + L  M   HI            CP+C +  + ++    G F
Sbjct: 564 DFIGAVDEIKDLRVAQVLDVLDEMLGPHIYPAREDGGDPRQCPSCGTGKLNLKAGKFGAF 623

Query: 624 LGCSGYGLPPKERCKTTINLGDEEGVI 650
           +GCS Y      R   + + GD + V+
Sbjct: 624 VGCSNYPECRYTRPLASDSAGDADRVL 650



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 712 GPTVECDKCGSDMV-LKNGRFGKYMGCTN-DACKNTRKI 748
           G   +C  CG+  + LK G+FG ++GC+N   C+ TR +
Sbjct: 600 GDPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPL 638