Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score = 97.1 bits (240), Expect = 3e-24
 Identities = 128/523 (24%), Positives = 228/523 (43%), Gaps = 66/523 (12%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIG--GDE-KRYKRVVFNEITKNAIQQAFK 160
           L+KL K A  +  A D DREG+ +   +   +G  GD+ ++ +R++ +++   A+++A  
Sbjct: 88  LRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALG 147

Query: 161 QPGELNMDGV---NAQQARRFMDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVKLL 212
           Q    N + +    +  AR   D + G  ++    L  +KV     LS GRVQ+  + L+
Sbjct: 148 QLRS-NREFIPLSTSALARSRADWLYGMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLV 206

Query: 213 VEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETE--------ALA 264
           V R+  I+ FV + F+++ A+  T ++  F+      +  A +P  + E        A  
Sbjct: 207 VRRDEAIEHFVSKPFYEVLANLYTQEQAHFKAKWQPSE--ACQPYMDEEGRVLSRRLAEN 264

Query: 265 AVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEA-G 323
            V  + +   +V   + K        P+  S+LQ  A+ R G   K  +   Q LYE   
Sbjct: 265 VVGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQIDAAKRFGMSAKTVLDTCQSLYEKHK 324

Query: 324 YITYMRTDSTNLSAEAV---ENLRGYITKHYGE----AYLPSQPNVYGSKQNAQ-EAHEA 375
            ITY R+DS  L  E +    ++ G + K  GE       P    V  +  +A+ +AH A
Sbjct: 325 LITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTAQCAAPDLKIVSKAWNDAKVDAHHA 384

Query: 376 IRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAA--EYTLKAK 433
           I P++      +L  +     ++Y  +  Q++A      +Y  T V V+ A   +  KAK
Sbjct: 385 IVPTEKVA---NLSALTQAEKQIYLQLARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAK 441

Query: 434 GRILKFDGWTRV------QRPLGKNEDQI--LPPVKVGDSLKLVSLDPKQHFTKPPARYT 485
             I    GW ++       +  G+ ++ +  LPP+  G  L     +  +  T+PP  +T
Sbjct: 442 QEIAL--GWKQLFPKRSDDKTDGEGDEALAQLPPLHKGQMLHSGQGELIEKQTQPPKAFT 499

Query: 486 EAALVKEL-----------------EKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEK 528
           +A L+  +                 E  G+G  +T A II  +  RG++    +   +  
Sbjct: 500 DATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGIIELLFKRGFLARQGKSIVSTP 559

Query: 529 MGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVL 571
           +G  + + L E+       D TA  E  LD I+  E  + + +
Sbjct: 560 VGRGLINSLPES---ATTPDMTALWESHLDAISRKEAKYLSFM 599