Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score = 1202 bits (3111), Expect = 0.0
 Identities = 593/875 (67%), Positives = 697/875 (79%), Gaps = 2/875 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60
           MGKSLVIVESPAKAKTINKYLGKD+IVKSSVGH+RDLPT+  +   +   + A  +K ST
Sbjct: 17  MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSDASSSTKSPAEVRKMST 76

Query: 61  TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL 120
            +K + K +K + AL+ +MGVDP  GW+A YQ LPGKEKVV ELQ LA++AD ++LATDL
Sbjct: 77  EEKAKYKADKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATDL 136

Query: 121 DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           DREGEAIAWHL+E+IGGD +RY+RVVFNEITK+AIQ+AF  P +LN + VNAQQARRF+D
Sbjct: 137 DREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRFLD 196

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
           RVVGFMVSPLLWKKVARGLSAGRVQSVA +L+VERE EIKAFVPEEFWDI+A+  T   +
Sbjct: 197 RVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLGNE 256

Query: 241 DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA 300
             ++ VA+  G  F PVNE +A+ AV AL  ++Y+V  RE K T+SKPSAPFITSTLQQA
Sbjct: 257 GLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVSSREVKATSSKPSAPFITSTLQQA 316

Query: 301 ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP 360
           ASTRLG+GVKKTMM+AQRLYEAG+ITYMRTDSTNLS EA++++R  I K YG+ YLP  P
Sbjct: 317 ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGDKYLPDAP 376

Query: 361 NVYGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTT 420
             YGSK+ AQEAHEAIRPSDV V+A  L  ME DA +LY LIW QFVACQMTPA+YD+T 
Sbjct: 377 IRYGSKEGAQEAHEAIRPSDVNVSATSLSDMERDAQRLYELIWRQFVACQMTPAKYDATR 436

Query: 421 VSVKAAEYTLKAKGRILKFDGWTRVQRPLGK--NEDQILPPVKVGDSLKLVSLDPKQHFT 478
           ++V A +Y LKA GR LKFDGWTRVQ  L K   ED  LP V  GD L L  L PKQHFT
Sbjct: 437 LTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAEGDVLALEELLPKQHFT 496

Query: 479 KPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLD 538
           KPPARY+EA+LVKELEKRGIGRPSTYA+IISTIQDRGYVKV+ RRF+AEKMGEIV++ L 
Sbjct: 497 KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLI 556

Query: 539 ENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNH 598
            +F++LM+YDFTA ME+ LD +A+G++ W  VLD F+   +  LE AE     GGM+PN 
Sbjct: 557 GSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRPNE 616

Query: 599 IVMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVE 658
           +V+T+I CPTC RPMGIRT +TGVFLGCSGY LPPKERCKTT+NL   E  ++   ED E
Sbjct: 617 MVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAE 676

Query: 659 TAALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
           T ALRAK RC +C TAMD+YLID+KRKLHVCGNNP C G+ VE+G+FK+KGYEGP +ECD
Sbjct: 677 TDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIECD 736

Query: 719 KCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVL 778
           +CG+DM LKNGRFGKY GCTN  CKNTRK+LKNGEVAPPKE+P+H PEL C  SD YFVL
Sbjct: 737 RCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFVL 796

Query: 779 RDGASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVRFS 838
           RDGA+G+F AAS FPKSRETRAPLVEEL ++ E L  KYQYL  AP  D DG  AVVRFS
Sbjct: 797 RDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVADEDGNKAVVRFS 856

Query: 839 RKEKEHYVRTETEGKPSGWMAVYQEGKWLVTDKRK 873
           RK KE YV TE +GK +GW A +  GKW+   K K
Sbjct: 857 RKTKEQYVATEIDGKATGWTAKFVGGKWVSEAKAK 891