Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  126 bits (317), Expect = 5e-33
 Identities = 203/829 (24%), Positives = 329/829 (39%), Gaps = 133/829 (16%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------KDFIVKSSVGHVRDLPTAGQTATPTGK 49
           M K L+I E P+ A+ I   LG            D IV S++GH+ +L  A   A   G 
Sbjct: 1   MSKILIIPEKPSVAQDIAAALGGFSKREDWFERDDAIVCSALGHLVEL--ACPEAEDPGF 58

Query: 50  AAAASTKKASTTDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAK 109
             A      S  +     +   R +L+KK+          N Q                 
Sbjct: 59  DLARLPAIPSRFNLAPIAKTSARLSLLKKL---------MNRQ----------------- 92

Query: 110 DADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAF--KQPGELNM 167
           D   V  A D  REGE I  ++  +  G  K  +R+    +T  AI++AF  ++PG   +
Sbjct: 93  DVQLVVNACDAGREGELIFRYIY-LCCGCRKPMQRMWIQSMTPAAIKEAFAKRRPGA-EL 150

Query: 168 DGV-NAQQARRFMDRVVGF---MVSPLLWKKVA--RGLSA-GRVQSVAVKLLVEREREIK 220
           DG+ N+ Q+R   D +VG        +L  +V   R LS  GRVQ+  + L+V RE  I+
Sbjct: 151 DGLFNSAQSRSEGDWLVGINGTRAYSILETRVTGERTLSTVGRVQTPTLALIVAREEAIR 210

Query: 221 AFVPEEFWDINADTLTAD--------KQDFRLLVAQKDGLAFKPVNETEALAAVAALNKA 272
           +F+ + +++I  +                F+   +  D  A +  ++ +A A VA     
Sbjct: 211 SFIAKPYYEIQGEFAAKTGVYGAKWIDTAFQADPSTPDARAERLFDKAKADAIVAKCTGK 270

Query: 273 QYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYI-TYMRTD 331
           +          + S P   F  +TLQ+ A+ + G+   +T+ +AQ LYE   + TY RTD
Sbjct: 271 RPSSVADATTDSISTPPKLFDLTTLQREANKKFGFSASQTLAIAQALYEKQKVLTYPRTD 330

Query: 332 STNLSAEAVENLRGYITKHYGEAYLPSQPNVYGSKQNAQ-------------EAHEAIRP 378
           S+ L  + ++  R  +T+  G+  L   P  + +K  A                H AI P
Sbjct: 331 SSALPEDYLDTARATLTR-LGDGGLTVSP--FAAKAVAMVKPDKRIFNNAKISDHFAIIP 387

Query: 379 SDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILK 438
           + +      L G EA   K++ L+  +F+A    PA+Y  T       + T +A GR+L 
Sbjct: 388 TGLVSAT--LSGEEA---KIFDLVSRRFIAAFFPPAKYLQTVRLTVVEQETFRASGRVLV 442

Query: 439 FDGWTRVQ-RPLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEK-- 495
            +GW  V  +    +ED  L  V   +  +   ++     TKPP R+TEA L+  +E   
Sbjct: 443 EEGWLAVYGKEADDSEDPALCAVAKDELPENRRIEAVSLKTKPPLRFTEATLLGAMESAG 502

Query: 496 --------------RGIGRPSTYASIISTI---------QDRGYVKVDQRRFF-AEKMGE 531
                         RG+G P+T AS I  +           + YV  +++      K  +
Sbjct: 503 ADIEDDELREAMKDRGLGTPATRASTIEALLADKDGKGRSIQPYVVREKKNLAPTNKAFK 562

Query: 532 IVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQD--E 589
           +V    +     L + + T   E KL ++ +G    +  + E  A  +R+  T  Q   +
Sbjct: 563 LVKFLRENGLTALASAETTGLWEFKLREMEKGRCQRSDFMGEIAA-LAREFVTRVQALAK 621

Query: 590 SLGGMKPNHIVMTNILCPTCSRPMGIRTASTGVFLGCS-GYGLPPKERCKTTINLGDEEG 648
            L              CP C       TA T     CS G+ +  +   +    L D EG
Sbjct: 622 DLPASAAMQAKPMAAACPKCGNTTMGATAKT---FSCSCGFRIWREVAGRV---LSDTEG 675

Query: 649 VINVLEEDVET-AALRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKV 707
              + +  + T A   + K+ P       A  +  K              F+ E+     
Sbjct: 676 EKLIAQGSLPTLAGFTSSKKKPFAAGLKLAEDLSGK------------VDFVFEQ---HT 720

Query: 708 KGYEGPTVECDKCGSDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAP 756
           +  E   V C +CG  M  + G  G + GC+     N     K+G+  P
Sbjct: 721 ESSEAAAVACPQCGKPMRRRKGGTGFFWGCSGYPDCNHTMDDKDGKAVP 769



 Score = 42.7 bits (99), Expect = 9e-08
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 604 ILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVETAALR 663
           + CP C +PM  R   TG F GCSGY       C  T++  D++G     +  V   A +
Sbjct: 728 VACPQCGKPMRRRKGGTGFFWGCSGY-----PDCNHTMD--DKDGKAVPKQPKVARQAGK 780

Query: 664 AKKRCPICE 672
             + CP C+
Sbjct: 781 VGETCPTCQ 789