Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., DNA topoisomerase III from Dechlorosoma suillum PS

 Score =  140 bits (353), Expect = 3e-37
 Identities = 170/676 (25%), Positives = 281/676 (41%), Gaps = 101/676 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------KDFIVKSSVGHVRDLPTAGQTATPTGK 49
           MGK L+I E P+ A  I K LG            +F++ S++GH+ +L    +     GK
Sbjct: 1   MGKQLIIAEKPSVAADIAKALGGFTKHDDYFESDNFVLSSAIGHLLELVIPEEYEVKRGK 60

Query: 50  AAAASTKKASTTDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAK 109
            + A                         + V P H      +    + K++ +L K  K
Sbjct: 61  WSFAH------------------------LPVIPPHFELKPVEKTESRLKLLTKLIK-RK 95

Query: 110 DADSVYLATDLDREGEAIAWHL-REIIGGDEKRYKRVVFNEITKNAIQQAFKQ--PGELN 166
           D D +  A D  REGE I  ++ R    G  K  +R+    +T  AI+  F +   GE  
Sbjct: 96  DVDGLVNACDAGREGELIFNYIARHAKSG--KAVQRLWLQSMTPQAIRDGFARLRRGE-E 152

Query: 167 MDGV-NAQQARRFMDRVVGFMVSPLL--WKKVARGL---SAGRVQSVAVKLLVEREREIK 220
           M G+ +A   R   D +VG   +  +  +     G    + GRVQ+  + L+VERER+I+
Sbjct: 153 MQGLGDAAVCRSESDWLVGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLSLVVERERKIR 212

Query: 221 AFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCK-- 278
            F    +W++ A T  A   +++    +    AFK  +E E   A    ++A+ +  +  
Sbjct: 213 EFKARPYWEVEA-TFAAAAGEYK---GKWFDEAFKGKDEDEHARADRLWDEARAKALQAK 268

Query: 279 ---------REDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEA-GYITYM 328
                     E KP+T      F  ++LQ+ A++R G+  K T+ LAQ LYE    +TY 
Sbjct: 269 CEGQPGEVSEEAKPSTQLSPLLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYP 328

Query: 329 RTDSTNLSAEAVENLRGYITKHYGEAYL----PSQPNVYGSKQNAQEAHEAIRPSD---- 380
           RTDS  L  + +  ++  +    GE        S  + YG   N     + + P+     
Sbjct: 329 RTDSRALPEDYLGTVQATLQMFNGENLTKGSDTSVVDRYGIFANKILKSKWVVPNKRIFN 388

Query: 381 ---------VTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLK 431
                    +  T    + +     KLY L+  +F+A     A+Y  TT   + A    K
Sbjct: 389 NAKISDHFAIIPTTQAPKNLSEPEQKLYDLVVKRFLAVFFPAAEYLITTRITRVAGEPFK 448

Query: 432 AKGRILKFDGWTRVQRPLGKNEDQ-ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALV 490
            +G++L   GW  +    G+  D+  L  V  G+ ++   +   Q+ T+PPARY+EA L+
Sbjct: 449 TEGKVLVNPGWLAIYGREGQEGDEGNLVAVSQGEKVQTEEVAVNQNETRPPARYSEATLL 508

Query: 491 KELE----------------KRGIGRPSTYASIISTIQDRGYVKVDQRRFF-AEKMGEIV 533
             +E                 RG+G P+T A II  +    Y+  + R      K   ++
Sbjct: 509 SAMEGAGKMVDDEELRAAMAGRGLGTPATRAQIIEGLITEQYLHREGRELIPTAKAFSLM 568

Query: 534 TDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGG 593
           T        +L + + T   E KL QI  G+++ +A + E        ++ A+  +S   
Sbjct: 569 TLLNGLGISELTSPELTGEWEWKLAQIERGDLSRSAFMQEIEEMTRHIVDRAKSYDS--D 626

Query: 594 MKPNHIVMTNILCPTC 609
             P    +    CP C
Sbjct: 627 TVPGDFGLLKSPCPKC 642