Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  101 bits (251), Expect = 2e-25
 Identities = 145/563 (25%), Positives = 237/563 (42%), Gaps = 83/563 (14%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIG--GDE-KRYKRVVFNEITKNAIQQAFK 160
           L+KL K AD++  A D DREG+ +   +   +G  GD+ ++ +R++ +++   A+++A  
Sbjct: 88  LKKLIKQADTLVNAGDPDREGQLLVDEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALS 147

Query: 161 QPGELNMDGV---NAQQARRFMDRVVGFMVS---PLLWKKVARG--LSAGRVQSVAVKLL 212
           Q    N + +    +  AR   D + G  ++    +  KKV     LS GRVQ+  + L+
Sbjct: 148 QL-RSNREFIPLSTSALARSRADWLYGMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLI 206

Query: 213 VEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALNKA 272
           V R+ EI  F  + F+++ A  +T DKQ F      +   A +P  + E    V +   A
Sbjct: 207 VRRDEEIAHFQSKPFYEVLAHLVT-DKQQF-FSAKWQPSEACQPYMDDE--GRVLSKGLA 262

Query: 273 QYEVCKREDKP-------TTSKPSA---PFITSTLQQAASTRLGYGVKKTMMLAQRLYEA 322
           Q  V +  DKP       T  K  +   P+  S LQ  A+ R G   K+ +   Q LYE 
Sbjct: 263 QNVVRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQIDAAKRFGMSAKEVLDTCQSLYER 322

Query: 323 -GYITYMRTDSTNLSAE---AVENLRGYITKHYGEAYLPSQPNVYGSKQNA-----QEAH 373
              ITY R+DS  L  E      ++   IT    E    S+      K  A      +AH
Sbjct: 323 HKLITYPRSDSRYLPTEQHGLASSVLNAITSGAPELVAHSEAPNPRLKSKAWDDKKVDAH 382

Query: 374 EAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQ-YDSTTVSVKAAEYTLKA 432
            AI P++       L   E    +LY  I  Q++A Q  PA  Y  T V V       K 
Sbjct: 383 HAIIPTEKQPNLGSLSQRE---RQLYLHIARQYLA-QFYPAYCYSETAVEVTIEGGLFKT 438

Query: 433 KGRILKFDGWTRV-QRPLGKNEDQI--------------------LPPVKVGDSLKLVSL 471
           K R  K  GW ++  R  G+ +D                      LPP+ +G  L     
Sbjct: 439 KARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGEYAGQLPPLILGQVLHCNQG 498

Query: 472 DPKQHFTKPPARYTEAALVKEL-----------------EKRGIGRPSTYASIISTIQDR 514
           +  +  T+PP  +T+A L+  +                 E  G+G  +T A II  +  R
Sbjct: 499 ELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKETDGLGTEATRAGIIELLFKR 558

Query: 515 GYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEF 574
           G+++   +   A ++G+ + + L  +       D TA  E  L+ I   ++++   +   
Sbjct: 559 GFIQRQGKSIVATEVGKGLINSLPLS---ATTPDMTALWEASLNGICHKDISYQGFMQPL 615

Query: 575 FADFSRDLET--AEQDESLGGMK 595
                  ++   A+   +L G+K
Sbjct: 616 LGTLHSLIQNAGAQLPSALNGLK 638