Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 180 a.a., DNA topoisomerase type IA zn finger domain-containing protein from Klebsiella michiganensis M5al

 Score = 44.3 bits (103), Expect = 6e-09
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 717 CDKCGSDMVLKNGRFGKYMGCTN-DACKNTR--KILKNGEVAPPKEEPVHFPELPCENSD 773
           C +CG+++V+++G+ G ++GC++   C   R  K   +G +    E         C +  
Sbjct: 15  CPQCGAELVIRSGKHGPFLGCSHYPDCDYVRPLKSQADGHIVKVLEGQT------CPSCG 68

Query: 774 AYFVLRDGASGLFFAASNFPKSRET 798
           A  VLR G  G+F   S++P    T
Sbjct: 69  AVLVLRQGRFGMFIGCSSYPDCEHT 93



 Score = 40.8 bits (94), Expect = 7e-08
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)

Query: 689 CGNNPNCEGFIVEEGEFK---VKGYEGPTVECDKCGSDMVLKNGRFGKYMGCTN-DACKN 744
           C + P+C+     + +     VK  EG T  C  CG+ +VL+ GRFG ++GC++   C++
Sbjct: 35  CSHYPDCDYVRPLKSQADGHIVKVLEGQT--CPSCGAVLVLRQGRFGMFIGCSSYPDCEH 92

Query: 745 TRKILKNGEVA 755
           T  I K  E A
Sbjct: 93  TELIDKPDETA 103



 Score = 37.0 bits (84), Expect = 9e-07
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 23/136 (16%)

Query: 600 VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEEDVET 659
           V  N  CP C   + IR+   G FLGCS Y  P  +  +   +  D   ++ VLE     
Sbjct: 9   VRKNEPCPQCGAELVIRSGKHGPFLGCSHY--PDCDYVRPLKSQADGH-IVKVLE----- 60

Query: 660 AALRAKKRCPICETAMDAYLIDDKRKLHV-CGNNPNCEGFIVEEGEFKVKGYEGPTVECD 718
                 + CP C   +   L   +  + + C + P+CE   +      +   +   + C 
Sbjct: 61  -----GQTCPSCGAVL--VLRQGRFGMFIGCSSYPDCEHTEL------IDKPDETAIACP 107

Query: 719 KCG-SDMVLKNGRFGK 733
           +CG   +V +  RFGK
Sbjct: 108 QCGQGHLVQRRSRFGK 123



 Score = 25.4 bits (54), Expect = 0.003
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 768 PCENSDAYFVLRDGASGLFFAASNFP 793
           PC    A  V+R G  G F   S++P
Sbjct: 14  PCPQCGAELVIRSGKHGPFLGCSHYP 39