Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 651 a.a., DNA topoisomerase III from Klebsiella michiganensis M5al

 Score =  110 bits (274), Expect = 4e-28
 Identities = 137/539 (25%), Positives = 225/539 (41%), Gaps = 81/539 (15%)

Query: 87  WQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-GDEKRYK-- 143
           WQ   Q  P   K +  +++L  DA  V  A D DREG+ +   + + +    EKR +  
Sbjct: 73  WQL--QPKPSVTKQLNVIKRLLGDAQEVIHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQ 130

Query: 144 RVVFNEITKNAIQQAFKQPGELN-----------------MDGVNAQQARRFMDRVVGFM 186
           R + N++   A+++A  +    +                 + G+N  +A   + R  G+ 
Sbjct: 131 RCLINDLNPQAVERAINRLRANSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQ 190

Query: 187 VSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLV 246
                       LS GRVQ+  + L+V R+ EI+ FV ++F+D+ A  +T   +D R + 
Sbjct: 191 GV----------LSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKAHIVT--PKDERFVA 238

Query: 247 AQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTT---------SKPS-APFITST 296
                 A +P  + E      +L  A++ V + E +P T         S+P+  PF  S 
Sbjct: 239 TWVPSEACEPYQDEEGRLLHRSL--AEHVVKRIEGQPATVTAYNDKRDSEPAPLPFSLSA 296

Query: 297 LQQAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAEAVENLRGYITK-HYGEA 354
           LQ  A+ R G+  +  + + Q+LYE    ITY R+DS  L  E        +       A
Sbjct: 297 LQIEAAKRFGFSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHAVLNAISVHAA 356

Query: 355 YLPSQPNVYGSKQN------AQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVA 408
            L  QP V    +N        +AH AI P   T  +  ++ +  +  K+Y LI  Q++ 
Sbjct: 357 DLLPQPVVDPEIRNRCWDDKKVDAHHAIIP---TARSSQVK-LSDNEEKVYGLIARQYLM 412

Query: 409 CQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRV---QRPLGKNEDQILPPVKVGDS 465
                A +    + +  A     AK R L   GW  +   +    +N+   LP V   D 
Sbjct: 413 QFCPDAVFRKCQIDLDIANGKFVAKARFLAEAGWRTLLGNKERDEENDGMPLPVVAKDDE 472

Query: 466 LKLVSLDPKQHFTKPPARYTEAALV------------KELEK-----RGIGRPSTYASII 508
           L     +  +  T+PP  +T+A L+            K+L+K      G+G  +T A II
Sbjct: 473 LLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGII 532

Query: 509 STIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNW 567
             +  RG++    R   +   G+ +   L E        D TA  E  L QI+E +  +
Sbjct: 533 ELLFKRGFLTKKGRYIHSTDAGKALFHSLPEM---ATRPDMTAHWESILTQISEKQCRY 588