Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  125 bits (314), Expect = 1e-32
 Identities = 94/318 (29%), Positives = 148/318 (46%), Gaps = 39/318 (12%)

Query: 285 TSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAG-YITYMRTDSTNLSAEAVENL 343
           T +P  PF  +TLQ+ A+TR GY  K T+  AQ LYE    ITY RTDS +L+ E    L
Sbjct: 370 TQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRTDSRHLTKE----L 425

Query: 344 RGYITKH-------YGEAYLPSQPNVYGSK-------QNAQEAHEAIRPSDVTVTADDLE 389
            G I  H       Y E  + +   +   K             H AI P   T    +L 
Sbjct: 426 FGEILNHLRAVHHLYPEETMLAVGRIKSGKARFACVDDRKVTDHHAIIP---TARKGNLT 482

Query: 390 GMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRVQRPL 449
            + A    +Y ++  + +A     A++ ++TV+V   E+   AKG++ K  GW  V+ P 
Sbjct: 483 QLSAPERNIYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKDKGWMVVE-PW 541

Query: 450 GKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELE--------------- 494
              ED  LP ++ G  L  + + P +  TK PA +T+A+L+  +E               
Sbjct: 542 RTAEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETAGRLVEDDALRQAM 601

Query: 495 -KRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARM 553
            +RG+G P+T A +I T+  RGYV    ++  A   G  V + +     D+ + + T + 
Sbjct: 602 KERGLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTTLLPDVASPELTGQW 661

Query: 554 EEKLDQIAEGEVNWTAVL 571
           E++L  I  G  ++ A +
Sbjct: 662 EKRLKDIEAGADSYPAFM 679



 Score = 64.3 bits (155), Expect = 3e-14
 Identities = 83/322 (25%), Positives = 132/322 (40%), Gaps = 60/322 (18%)

Query: 1   MGKSLVIVESPAKAKTINKYLGK-----------DFIVKSSVGHVRDLPTAGQTATPTGK 49
           M K+L+I E P+ A+ I   +G            D +V  +VGH+  +      A P   
Sbjct: 1   MSKTLIIAEKPSVAREIAPLVGAQGRRAGYLEGPDHLVSWAVGHLVGI------AEP--- 51

Query: 50  AAAASTKKASTTDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAK 109
                        +EQ +    R  L +   + P    +   ++LP      + LQ+L  
Sbjct: 52  -------------EEQDEAWAGRWTLEQLPMLPP----RFQLRVLPETADQFSVLQRLLL 94

Query: 110 D--ADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQ--PGEL 165
           D     +  ATD  REGE I   +  ++ G +K  +R+  +++T+  ++++  +  P E 
Sbjct: 95  DDRVTGIVNATDAGREGELIFRRIY-LVAGCDKPVRRLWASDMTEEGLRKSLARLLPDEE 153

Query: 166 NMDGVNAQQARRFMDRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPE 225
             +   A  AR   D +VG   S L   K    +S GRVQ+  + LL +R R+I+ F P+
Sbjct: 154 KRNLGLAAFARAEADWLVGMNFSRLFTVKSGGLVSVGRVQTPVLCLLADRRRDIEHFTPQ 213

Query: 226 EFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTT 285
           +FW + A   T DK      +        +P+    A + V          C  E  P T
Sbjct: 214 DFWTVEA---TFDKN-----LDAGTSTGTRPMTSPAARSTVP---------CLAESGPAT 256

Query: 286 -SKPSAPFITSTLQQAASTRLG 306
              P AP    T Q  A T  G
Sbjct: 257 GDAPPAPDGDRTTQSEAQTDEG 278