Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 876 a.a., DNA topoisomerase III from Ralstonia sp. UNC404CL21Col

 Score =  151 bits (382), Expect = 1e-40
 Identities = 172/672 (25%), Positives = 279/672 (41%), Gaps = 104/672 (15%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------KDFIVKSSVGHVRDLPTAGQTATPTGK 49
           M K+L+I E P+ A  I + LG            D+++ S+VGH+ ++    +     GK
Sbjct: 1   MSKALIIAEKPSVAADIARALGGFTKHDEYFESDDYVLSSAVGHLVEIAAPDEYEVKRGK 60

Query: 50  AAAASTKKASTTDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAK 109
            + A                         + V P H           + KV+  L K  K
Sbjct: 61  WSFAH------------------------LPVIPPHFDLRPIAKSESRLKVLTRLIK-RK 95

Query: 110 DADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQ--PGELNM 167
           D  S+  A D  REGE I + L       +   KR+    +T  +I+  F +    E  +
Sbjct: 96  DVTSLINACDAGREGELI-FRLIAQHANTKLPVKRLWLQSMTPQSIRDGFAKLRSDEEMI 154

Query: 168 DGVNAQQARRFMDRVVGFMVSPLLWKKVARG-----LSAGRVQSVAVKLLVEREREIKAF 222
              +A + R   D +VG   +  +    ++G      + GRVQ+  + ++VERE +IK F
Sbjct: 155 PLADAARCRSEADWLVGINGTRAMTAFNSKGGGFFLTTVGRVQTPTLSIVVEREEKIKRF 214

Query: 223 VPEEFWDINADTLTA-------------DKQDFRLLVAQKDGLAFKPVNETEALAAVAAL 269
           V  ++W++ A+ + A              K +F     Q+D   +   +E EA + VAA 
Sbjct: 215 VQRDYWEVRAEFIAAAGLYEGRWFDPKFKKNEFD--PEQRDSRLW---SEAEAKSIVAAC 269

Query: 270 NKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYI-TYM 328
                 V + E KP+T    A F  ++LQ+ A+ R G+  K T+ LAQ LYE   + TY 
Sbjct: 270 RDKPGSVTE-ESKPSTQMSPALFDLTSLQREANGRFGFSAKNTLGLAQALYEKHKVLTYP 328

Query: 329 RTDSTNLSAEAV-----------ENLRGYITKHYGEAYLPSQ---PNVYGSKQNAQEAHE 374
           RTDS  L  + +           E+   Y+T  + +  L +Q   PN      +    H 
Sbjct: 329 RTDSRALPEDYMGTVKQTLDMLGESSPNYLT--HAKKILANQWVKPNKRIFDNSKISDHF 386

Query: 375 AIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKG 434
           AI P     T    + +     KLY L+  +F+A     A+Y  TT   + A +  K +G
Sbjct: 387 AIIP-----TLQAPKNLSEPEQKLYDLVVRRFLAVFFPAAEYQVTTRITEVAGHHFKTEG 441

Query: 435 RILKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELE 494
           ++L   GW  V     + ED  L PV   + +K   ++P    TKPPARY EA L+  +E
Sbjct: 442 KVLVNPGWLVVYGREAQGEDANLVPVAKDEKVKTDKVEPVGLTTKPPARYNEATLLSAME 501

Query: 495 ----------------KRGIGRPSTYASIISTIQDRGYVKVDQRRFF-AEKMGEIVTDRL 537
                            +G+G P+T A+II  +    Y+  + R      K  +++T   
Sbjct: 502 GAGKLVDDDALREAMAGKGLGTPATRAAIIEGLLTEKYLVREGRELIPTAKAFQLMTLLR 561

Query: 538 DENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPN 597
               ++L   + T   E KL  I  G++     + E      + ++ A++ +S     P 
Sbjct: 562 GLGVEELTQAELTGGWEHKLSLIERGQLERDEFMREIAQMTQQIVKRAKEYDS--DTIPG 619

Query: 598 HIVMTNILCPTC 609
                +  CP C
Sbjct: 620 DYATLSTPCPQC 631