Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 97/449 (21%), Positives = 176/449 (39%), Gaps = 38/449 (8%)

Query: 104 LQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFK--Q 161
           ++K+    +S+  ATD  REGE +  +L   +    K Y+R+  + +T  A+ +     +
Sbjct: 95  IEKVFDACESIIAATDASREGEMVFRYLYRYLEC-RKSYRRLWISSLTDEAVLEGMDNLR 153

Query: 162 PGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVARGL-SAGRVQSVAVKLLVEREREIK 220
           PG L      A  +R   D V+G   S  L +    G  S GRVQ+  +  +  R RE +
Sbjct: 154 PGSLYDHMFLAADSRNKADWVLGLNASYALCQATGTGNNSLGRVQTPILAAISSRYRERE 213

Query: 221 AFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKRE 280
             +  + + +           F  L      L  +   E     A A L    Y  CK  
Sbjct: 214 NHIATDTFPV-----------FISLCKNNTLLKMRCTEEFTDREAAARL----YSDCKLA 258

Query: 281 DKPTTS---------KPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYITYMRTD 331
                +         +P A +  + LQ+ A+   G    K++ +AQ+LYE   I+Y RT 
Sbjct: 259 GHARVTAVSRQVREIEPPALYNLTELQKDANNYYGMTAGKSLEIAQKLYEKKLISYPRTA 318

Query: 332 STNLSAEAVENLRGYITKHYGEA----YLPSQP-NVYGSKQNAQEAHEAIRPSDVTVTAD 386
              L  +  + L   + K         Y+ S   N++       +  +A     + +T  
Sbjct: 319 GRFLPRDVYDKLPRIMEKILNRKEFRPYVRSMGINIFDLPDKVVDEGQAAEHHAIIITDT 378

Query: 387 DLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRV- 445
             EG+  +  +LY +I  + +   M   + + TTV    A    +     +   GW  + 
Sbjct: 379 YPEGLNREEMQLYMMIIGRMLEAFMPVCRAEYTTVDAVCAARNFRCHACRIIEKGWFGIF 438

Query: 446 --QRPLGKNEDQI--LPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRP 501
             +  +   E     +P ++ G++  +             + YT+A L+  ++  G+G  
Sbjct: 439 ERESVIAGREYGFSPIPQLENGETAAVTGCSLIHRKDLTVSAYTDAELITYMDTAGLGTA 498

Query: 502 STYASIISTIQDRGYVKVDQRRFFAEKMG 530
           +T   I+ T+ DR YV+   +     + G
Sbjct: 499 ATRTGILQTLIDRKYVRYSGKYIIPTRKG 527