Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., DNA topoisomerase I (Omega-protein) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  152 bits (383), Expect = 9e-41
 Identities = 138/518 (26%), Positives = 243/518 (46%), Gaps = 64/518 (12%)

Query: 88  QANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVF 147
           +  Y+  PG  K +  ++ +   +D + +ATD  REGE I  ++   IG + K + R+  
Sbjct: 79  EKGYKADPGALKQLKVIKDVFDQSDKIIVATDAGREGELIFRYIYNYIGCN-KPFVRLWI 137

Query: 148 NEITKNAIQQAFK--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVARGL-SAGRV 204
           + +T  +I++  +  + G L  +   + QAR   D ++G   +  L     +G+ S GRV
Sbjct: 138 SSLTDKSIREGLQNLKAGSLYDNLFLSAQARSEADYLIGINGTQALSVAAGQGIFSLGRV 197

Query: 205 QSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVN------ 258
           QS  + ++  R  E K FVP+++W +              L A KD ++F  ++      
Sbjct: 198 QSPTLAMICTRFLENKNFVPQKYWQLK-------------LQAAKDNVSFAALSTDKCDK 244

Query: 259 ETEALAAVAALNKAQ-YEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQ 317
           +  A+  +  + +A+  +V   E K    +P   +  +TLQ+ A+T+L +   KT+ +AQ
Sbjct: 245 QQPAIDTLQRIKEAETVQVKTVERKEVNQEPPLLYDLTTLQKEANTKLNFSADKTLSIAQ 304

Query: 318 RLYEAGYITYMRTDSTNLSAEAVE-------NLRGYITKHYGEAYLPSQPNVYGSKQNAQ 370
           +LYE   I+Y RT S  +S +  E       NL  Y T+  G A       + G   N++
Sbjct: 305 KLYEGKLISYPRTGSRYISQDVFEEIPERLVNLEQY-TRFGGYA-----AGMKGKALNSR 358

Query: 371 EAHEA-IRPSDVTVTADDL-EGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEY 428
             ++  +      +  ++L + MEAD   +Y LI  + +         D T+V+++ A  
Sbjct: 359 SVNDGKVTDHHALIVTENLPDKMEADEQAIYELIAGRMLEAFSEKCVKDVTSVTLECAGS 418

Query: 429 TLKAKGRILKFDGWTRVQRPLGKNED----QILPPVKVGDSLKLVSLDPKQHFTKPPARY 484
               KG ++K  GW  V    G+ ED      LP ++ GDSL L  ++  +  TKP   +
Sbjct: 419 LFTVKGSVIKSAGWRAV---FGEKEDGEDNAALPAMQDGDSLPLSGIELLEKQTKPKPLH 475

Query: 485 TEAALV-------KELEK---------RGIGRPSTYASIISTIQDRGYVKVDQRRFFAEK 528
           TE++L+       KELE           GIG P+T A+II T+  R Y+  +++     +
Sbjct: 476 TESSLLSSMETAGKELENADLKASMKDTGIGTPATRAAIIETLFSRQYIVREKKNLVPTE 535

Query: 529 MGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVN 566
            G  V + + +    + + + T   E  L +I  GE+N
Sbjct: 536 KGLTVYNIIRDK--KIADVEMTGMWENTLAKIESGEMN 571