Pairwise Alignments

Query, 260 a.a., tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM from Vibrio cholerae E7946 ATCC 55056

Subject, 256 a.a., smtA protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  196 bits (499), Expect = 3e-55
 Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 3/256 (1%)

Query: 3   EDRNFDDIAHKFAKNIYGSDKGEIRQVIVWEDLEQLLSQLDTQKVPLHVLDAGGGLAQVS 62
           +D+NFD +A KFAKNIYG+ KG+IR  ++W DLE++L  L  ++  L VLDAGGG    S
Sbjct: 2   QDKNFDTLAGKFAKNIYGTLKGDIRAAVLWRDLEEMLPLLGERR--LRVLDAGGGFGFFS 59

Query: 63  QKIARLGHRVTLCDLSSEMLQLAEQDIANNGLLEQYRFVHSPVQTIQAHLDAPVDLVLFH 122
           QK+A LGH V LCD+S+EML  A++ IA +      + +H+P+Q +        DL+L H
Sbjct: 60  QKLAALGHSVVLCDISAEMLAEAKRHIALSPTPLDIQCIHAPIQDLSRDALGEFDLILCH 119

Query: 123 AVMEWLAEPKPALQNLLAQVRPGGMVSVMFYNYHGLVYKNAVCGNIPHVLEDMPHRKRFK 182
           AV+EWLA+ K  + +LL  ++PGG+ S+MFYN   + + + + GN  +V       KR K
Sbjct: 120 AVVEWLADAKGTMTSLLTLLKPGGLFSLMFYNRDAMCFHSLIAGNFGYVQSGF-KAKRVK 178

Query: 183 LQPQKGLLPEEVYQWIEESSFEICGKSGIRCFSDYIGNMKNMGEYQYEDLVALERKFCRQ 242
           L P   +   EV  W +    +I  +SG+R   DY+       EY    L+ +E K+ R+
Sbjct: 179 LSPNFPVTVPEVEAWCDGWQMDIHCRSGVRVIHDYLKKGSLSTEYSDTGLIEMELKYSRE 238

Query: 243 EPYLSLGRYIHVWAKK 258
             +L LGRY+H  A+K
Sbjct: 239 PAFLRLGRYVHFVAQK 254