Pairwise Alignments

Query, 789 a.a., YgiQ family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

Subject, 780 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  970 bits (2508), Expect = 0.0
 Identities = 482/760 (63%), Positives = 574/760 (75%), Gaps = 12/760 (1%)

Query: 11  YKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGF 70
           Y KY       APFLP SR+EM +LGWDSCD+IIVTGDAYVDHPSFGMA+IGR+LEAQGF
Sbjct: 10  YPKYLGRNEKPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGF 69

Query: 71  RVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGM 130
           RVGII+QP+W +K+ FM LGKPNL+FGVTAGNMDSMINRYTA++++RHDDAYT  N GG 
Sbjct: 70  RVGIISQPDWSSKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRLRHDDAYTAGNVGGK 129

Query: 131 RPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILLDAKADILLFG 190
           RPDR   VY+QRC+EAYK VP+V+GGIEASLRR+AHYDYWSDKVRRS++LDAKADIL++G
Sbjct: 130 RPDRAVTVYTQRCKEAYKQVPVVIGGIEASLRRIAHYDYWSDKVRRSVILDAKADILVYG 189

Query: 191 NAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQPNKPFVPSNPY 250
           NAER LVE++HRLA GES+  + D+RGT V   +    +K +DS ++DQ +K     NPY
Sbjct: 190 NAERPLVELSHRLAAGESVGDIHDVRGTTVIRKEPLYGWKGMDSRKLDQLHKIDPVPNPY 249

Query: 251 EVET--------QCATKGDEKEEAQPITIRPSRHDA-KTTAVRLPSFEKLVNDRILYAHA 301
             +             K  + +  +PI+++P R    + T V LPS+EK+  D+ LYAHA
Sbjct: 250 GADDVGCQNLSGPSDVKVFDNDAPKPISVQPPRPKPWEKTYVLLPSYEKVAGDKYLYAHA 309

Query: 302 SRVLHLETNPYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKI 361
           SR+LH E NP   RAL Q HG+R +WVN    PL T+EMD VF L Y RVPHP YG  KI
Sbjct: 310 SRILHQEQNPGCARALFQPHGERAIWVNPPAWPLNTDEMDGVFDLAYKRVPHPVYGKEKI 369

Query: 362 PAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRDKVPGFTGVIS 421
           PAYDMIKTS+NIMRGCFGGCSFCSITEHEGRIIQ+RSQ+SII E+K+I+DKVPGFTGVIS
Sbjct: 370 PAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQDSIIKEIKDIQDKVPGFTGVIS 429

Query: 422 DLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKKV 481
           DLGGPTANMYRLGC+  KAE+ CRR SCVFP IC  L+T+H+ TIDLYRAARDV GIKKV
Sbjct: 430 DLGGPTANMYRLGCTSVKAESTCRRLSCVFPSICGHLDTNHQATIDLYRAARDVPGIKKV 489

Query: 482 VIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELF 541
           +IASGVRYDLA E P YV+EL +HHVGGYLKIAPEHTE+GPL+ MMKPGMGTYD+FKELF
Sbjct: 490 LIASGVRYDLATEDPRYVKELASHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKELF 549

Query: 542 EKYSAEAGKKQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAM 601
           +KYSAEAGKKQYLIPYFI+AHPGT DEDMVNLALWLK   ++ DQVQNFYPSPM NAT +
Sbjct: 550 DKYSAEAGKKQYLIPYFISAHPGTTDEDMVNLALWLKGEKFKLDQVQNFYPSPMANATTI 609

Query: 602 YHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREALIAMGKRHLIG 661
           YH E+N LK VK+   E V V KG  QR+LHKALLRYHDPA WPMIREALI MGK HLIG
Sbjct: 610 YHTELNSLKNVKHSS-ETVEVPKGGRQRKLHKALLRYHDPAGWPMIREALIKMGKEHLIG 668

Query: 662 DRPECLIPEKDSDLVTPAQSRKSGRHGANRFATKHTHSQPGFDALRGNKSGGQGRPNSGN 721
               CL+P +        +++ +      +  T+ + +Q  FD  +GN  G     + G 
Sbjct: 669 GGANCLVPAETRQERQGYRAKTANTPAGKKAVTRFSANQ--FDERKGNGQGNAQGKSQGK 726

Query: 722 KSNQGKPAGSKPTGSKPTANKPAGNQSARSEQNRGQQGQR 761
             +QG+ AG   +G   T    AG  SA    +RG+ G+R
Sbjct: 727 GKSQGQAAGKGVSGKGSTGKGSAGKSSAGKAGSRGKPGKR 766