Pairwise Alignments

Query, 789 a.a., YgiQ family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

Subject, 786 a.a., hypothetical Fe-S oxidoreductase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  984 bits (2544), Expect = 0.0
 Identities = 500/793 (63%), Positives = 592/793 (74%), Gaps = 32/793 (4%)

Query: 1   MHSEVTPIHHYKKYWAECFGTAPFLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAI 60
           M  E T   H  KYWAECFGTAPFLP SR+EM++LGWDSCD+IIVTGDAYVDHPSFGMA+
Sbjct: 1   MQVESTLFSH-PKYWAECFGTAPFLPMSRKEMEKLGWDSCDIIIVTGDAYVDHPSFGMAV 59

Query: 61  IGRLLEAQGFRVGIIAQPEWQTKDAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDD 120
           IGR+LEAQG+RVGIIAQP+W +KDAFM LG+PNLFFGVTAGNMDSMINRYTAD++IR DD
Sbjct: 60  IGRMLEAQGYRVGIIAQPDWSSKDAFMQLGRPNLFFGVTAGNMDSMINRYTADRRIRSDD 119

Query: 121 AYTPNNKGGMRPDRCSLVYSQRCREAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILL 180
           AYTP + GG RPDR   VY+QRC+EA+KDVP+++GGIEASLRR+AHYDYWSDKVRRS++ 
Sbjct: 120 AYTPGDVGGKRPDRAVTVYTQRCKEAFKDVPVIIGGIEASLRRIAHYDYWSDKVRRSVIF 179

Query: 181 DAKADILLFGNAERALVEVAHRLANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQP 240
           DAKADIL++GNAER L EVA RLA GE+I  + D+RGTAV   +    ++ +DS +IDQ 
Sbjct: 180 DAKADILMYGNAERPLAEVARRLAAGEAIADIQDVRGTAVIRKEPMPEWRGMDSRKIDQL 239

Query: 241 NKPFVPSNPYEVE-TQCAT-------KGDEKEEAQPITIRPSRHDA-KTTAVRLPSFEKL 291
           +K     NPY  +   CA        K  + +  +PI+++P R      T V LP+FEK+
Sbjct: 240 HKIDPIPNPYGADDVGCANLSGPSDAKIFDNDAPKPISVQPPRPKPWDKTYVLLPAFEKV 299

Query: 292 VNDRILYAHASRVLHLETNPYSGRALVQRHGDRELWVNQAPIPLTTEEMDFVFGLYYARV 351
             D+ LYAHASR+LH E NP   RAL Q HGDR +WVN    PL T+EMD VF L Y RV
Sbjct: 300 SEDKYLYAHASRILHQEQNPGCARALFQPHGDRGVWVNPPAWPLNTDEMDAVFDLPYKRV 359

Query: 352 PHPKYGDAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSQESIINELKEIRD 411
           PHP YG  KIPAYDMIKTS+NIMRGCFGGCSFCSITEHEGRIIQ+RSQESII E+K+I+D
Sbjct: 360 PHPAYGKEKIPAYDMIKTSINIMRGCFGGCSFCSITEHEGRIIQSRSQESIIKEIKDIQD 419

Query: 412 KVPGFTGVISDLGGPTANMYRLGCSDPKAEANCRRPSCVFPGICHKLNTDHKHTIDLYRA 471
           KVPGFTGVISDLGGPTANMYRLGC+  KAE  CRR SCV+P IC  L TDHKHTIDLYRA
Sbjct: 420 KVPGFTGVISDLGGPTANMYRLGCTSEKAEKTCRRLSCVYPSICGHLGTDHKHTIDLYRA 479

Query: 472 ARDVDGIKKVVIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLSMMMKPGM 531
           AR V GIKK++IASGVRYDLAIE P YV+ELV HHVGGYLKIAPEHTE+GPLS MMKPGM
Sbjct: 480 ARAVPGIKKILIASGVRYDLAIEDPAYVKELVQHHVGGYLKIAPEHTEEGPLSKMMKPGM 539

Query: 532 GTYDRFKELFEKYSAEAGKKQYLIPYFIAAHPGTEDEDMVNLALWLKSNNYRCDQVQNFY 591
           G YD+FKELF+K+S EAGK+Q+LIPYFI+AHPGT DEDM+NLALWLK   ++ DQVQNFY
Sbjct: 540 GAYDKFKELFDKFSKEAGKEQFLIPYFISAHPGTTDEDMLNLALWLKERKFKLDQVQNFY 599

Query: 592 PSPMCNATAMYHAEVNPLKRVKYKKPEKVPVAKGEAQRRLHKALLRYHDPANWPMIREAL 651
           PSPM NAT +YH E+N LK VK+   E VPV K   QRRLHKALLRYHDPA WP+IRE L
Sbjct: 600 PSPMANATTIYHTELNSLKNVKHTS-EVVPVPKKGRQRRLHKALLRYHDPAGWPIIREGL 658

Query: 652 IAMGKRHLIGDRPECLIPEKDSDLVTP--AQSRKSGRHGANRFATKHTHSQPGFDALRGN 709
           IAMG+  LIG+ P  L+P +  +   P   +    G+    RF+         FD  +G 
Sbjct: 659 IAMGREDLIGNSPNHLVPPEGRNERGPKWMKDANQGQKALTRFSGNQ------FDERKG- 711

Query: 710 KSGGQGRPNS----GNKSNQGKPAGSKPTGSKPTANKPAGN-------QSARSEQNR-GQ 757
           K   +G+P++    G KS    P   +P  S+P A  P G        +  ++ QN+ G 
Sbjct: 712 KGDAKGKPSASKPKGPKSGANAPQSQQPKTSRPGAKAPFGQSGFKGKAEQGKAGQNKAGH 771

Query: 758 QGQRGSATGGKPQ 770
           QG+ G A+ G+ Q
Sbjct: 772 QGRAGKASSGRQQ 784