Pairwise Alignments

Query, 789 a.a., YgiQ family radical SAM protein from Vibrio cholerae E7946 ATCC 55056

Subject, 680 a.a., radical SAM domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  448 bits (1153), Expect = e-130
 Identities = 280/760 (36%), Positives = 404/760 (53%), Gaps = 101/760 (13%)

Query: 24  FLPTSREEMDQLGWDSCDVIIVTGDAYVDHPSFGMAIIGRLLEAQGFRVGIIAQPEWQTK 83
           FLP SR EM  +GWD+ DV++++GDAYVDHP+F  A++GR L A G+R GI+AQP W T 
Sbjct: 17  FLPMSRAEMHAIGWDALDVLLISGDAYVDHPTFAAALLGRWLVAHGYRTGIVAQPRWNTP 76

Query: 84  DAFMTLGKPNLFFGVTAGNMDSMINRYTADKKIRHDDAYTPNNKGGMRPDRCSLVYSQRC 143
           +  + +G+P LF G+ AG +DSM+  YTA +K RHDDAYTP  K G RP+R  +VY+   
Sbjct: 77  EDVLCMGRPRLFAGIAAGAIDSMLAHYTAFRKKRHDDAYTPGGKAGARPNRAVIVYTNLL 136

Query: 144 REAYKDVPIVLGGIEASLRRVAHYDYWSDKVRRSILLDAKADILLFGNAERALVEVAHRL 203
           R+A+  +P+V+GGIEASLRR  HYD+W+D +RRSILLDAKAD+L++G  E AL E A R 
Sbjct: 137 RQAFAGLPVVIGGIEASLRRATHYDFWTDSLRRSILLDAKADLLVYGMGEYALREAAARY 196

Query: 204 ANGESINKMVDIRGTAVNLAQVPEHFKIIDSTRIDQPNKPFVPSNPYEVETQCATKGDEK 263
                     D        A   E    I  T                     A  G E 
Sbjct: 197 ----------DAAMNEGGAATAAEALHGIGGT---------------------AWVGTES 225

Query: 264 EEAQPITIRPSRHDAKTTAVRLPSFEKLVNDRILYAHASRVLHLETNPYSGRA-LVQRHG 322
           +  +  +I           +RLPS E +  D  L   A+  L  E + + G A  +Q  G
Sbjct: 226 DMPEGASI-----------MRLPSHEDISADVRLLMEAT--LQQERHVHRGDAWAIQPVG 272

Query: 323 DRELWVNQAPIPLTTEEMDFVFGLYYARVPHPKYGDAKIPAYDMIKTSVNIMRGCFGGCS 382
            R + +     P+++E++D ++ L + R  HP Y +  +PA DMI+TS+   RGC GGCS
Sbjct: 273 SRAVIMAPPAPPMSSEDLDRLYALPFTREAHPSYRET-VPAADMIRTSITTHRGCGGGCS 331

Query: 383 FCSITEHEGRIIQNRSQESIINELKEIRDKVPGFTGV-ISDLGGPTANMYRLGCSDPKAE 441
           FCS+  H+GR I +RS++S++ E +++        GV ISD+GGP+ANM++  C+     
Sbjct: 332 FCSLALHQGRRIASRSRDSVLAEARDLA--AAARKGVSISDVGGPSANMWQARCT--LNP 387

Query: 442 ANCRRPSCVFPGICHKLNTDHKHTIDLYRAARDVDGIKKVVIASGVRYDLAIESPEYVRE 501
           A CRR SC+FP +C     D +  + L R  RD  G++ V +ASGVR+DLA+   E +R 
Sbjct: 388 AKCRRASCMFPSVCKGFAVDQRKAVRLLREVRDTPGVRNVRVASGVRFDLALREGEALRA 447

Query: 502 LVTHHVGGYLKIAPEHTEKGPLSMMMKPGMGTYDRFKELFEKYSAEAGKKQYLIPYFIAA 561
                 GG LK+APEH     L  M KPG+  +++F E F  +S EAGK+QY++PY ++A
Sbjct: 448 YTMEFTGGQLKVAPEHICDEVLEYMRKPGLPVFEKFLEAFAAFSDEAGKEQYVVPYLLSA 507

Query: 562 HPGTEDEDMVNLALWLKSNNYRCDQVQNFYPSPMCNATAMYHAEVNPLKRVKYKKPEKVP 621
            PG  D+ M  L+ WL++  +   QVQ F P+P   ATAMY A ++P       +   +P
Sbjct: 508 FPGCTDDHMRTLSRWLQARGWSPQQVQCFIPTPGTVATAMYAAGIDP-------EGNPIP 560

Query: 622 VAKGEAQRRLHKALLRYHDPANWPMIREALIAMGKRHLIGDRPECLIPEKDSDLVTPAQS 681
           VA+ +A+R      LR H            I M        RP    P +D+D      +
Sbjct: 561 VARTDAER------LRQHG-----------ILMPDT----GRP----PSRDADNRRRGDA 595

Query: 682 RKS--GRHGA-NRFATKHTHSQPGFDALRGNKSGGQGRPNSGNKSNQGKPAGSKPTGSKP 738
           R+S  GR  A  R    H   +   D    N+  G      G + ++ +P   +  G++P
Sbjct: 596 RQSETGRGKAGTRDGRPHRSDR---DTGNANRHDGGRSDRRGGRRDEDRPDRGRRNGARP 652

Query: 739 TANKPAGNQSARSEQNRGQQGQRGSATGGKPQGSGRPASR 778
                 G    R++    ++G++G        GS RP  R
Sbjct: 653 ----DGGANRGRADAEERREGRKG--------GSKRPPRR 680