Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1247 a.a., sensory box/GGDEF domain/EAL domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  184 bits (467), Expect = 3e-50
 Identities = 152/541 (28%), Positives = 244/541 (45%), Gaps = 21/541 (3%)

Query: 131  LFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQQ 190
            +F++   GV+ITD Q  I A NR F + TGY + E LG    +  SG H   FY  MW Q
Sbjct: 687  VFESTAEGVLITDTQQHISAVNRAFTEITGYSETEALGHTPRLLASGLHDSAFYAAMWHQ 746

Query: 191  LREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAP--HLDRVLDKQ 247
            L  +G W G I ++R +GE++P  L+I  +  +  QI  ++    D++   H    LD Q
Sbjct: 747  LTAEGHWQGEISNRRKNGELYPSWLTISAVRNRDRQITHFVAVFADISSLKHAQARLDYQ 806

Query: 248  AGDVELLTQLPTLSKFSDQLKQRLPKQQT--TTGFVLAIQP---KFSSDKYYAQI----- 297
            A   + LT LP  + F  +L   L  QQ   + G VL +     K  +D     +     
Sbjct: 807  AHH-DPLTGLPNRTLFESRLLAALNGQQENGSQGAVLFLDLDRFKHINDSLGHPVGDLLL 865

Query: 298  RRLAASLAQN-RQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQ 356
            + +A  L +  R +      G   F+  L   +  +      + + L   F    Q G  
Sbjct: 866  KGIAVRLREQLRDIDTVARLGGDEFIILLPGLQ--QPSDAEHIAQKLLNCFAAPFQAG-- 921

Query: 357  EAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRK 416
              H+      +G S+   D   +  LV +A  AM    A     +  Y R +  Q   R 
Sbjct: 922  -EHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSKAKGRNRVESYTRDLTAQASERV 980

Query: 417  TLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLG 476
             LE  +++ I   ++ + +QP +      +V  EAL R+  P       +  I +AE+ G
Sbjct: 981  ALEHELRRAIERNELSLSFQPKISLVDNQLVGAEALIRWTHPTFGDVPPEHFIPLAEENG 1040

Query: 477  LINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLA 536
            +I Q+ + +  +A + L + +  +     +S+N +  + L    +L  +  +L E     
Sbjct: 1041 MILQIGDWVLERACRQLCEWNDAYDSLGPLSVNLA-GAQLRQPNLLGRIEQLLREHQLEP 1099

Query: 537  KNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDR 596
              + +E+TE        +   VL  L+  GV +AIDDFGTG+SS SYL     D LKID+
Sbjct: 1100 GLLQLEITENFIMSQAEEALTVLHQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDQ 1159

Query: 597  EFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKP 656
             FV  +       AIV+ +  L  ++   ++AEGVET  +   L   G + +QG+  + P
Sbjct: 1160 SFVRGLPDDPHDAAIVRAIIALGRSMQFTIIAEGVETLAQQQFLTEEGCEQIQGYIVSLP 1219

Query: 657  L 657
            L
Sbjct: 1220 L 1220