Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 635 a.a., GGDEF domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  189 bits (479), Expect = 5e-52
 Identities = 154/548 (28%), Positives = 257/548 (46%), Gaps = 23/548 (4%)

Query: 130 ALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQ 189
           A+FD    GV++TD    I+  NR F   TGY ++E+LG + S+F SG+H   FY DM+ 
Sbjct: 87  AVFDCTREGVLVTDRNGLIVHVNRAFMAITGYVRDEVLGQRPSLFKSGRHGPDFYRDMFT 146

Query: 190 QLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQI-FYIGFTTDLAPHLDRVLD-KQ 247
            L  QG WSG I ++R SGE++PQ  +I+ +    G+I  Y+   +D++   D   +   
Sbjct: 147 SLDSQGEWSGEIWNRRKSGEIYPQWQTIRVIRDDSGEISHYVAVFSDISAIKDSEHELAY 206

Query: 248 AGDVELLTQLPTLSKFSDQLKQRLPKQQT-TTGFVLAIQPKFSSDKYYAQIRRLAASLAQ 306
               + LT LP    FSD+ +Q L   Q    G  L +      D +    + +  SL  
Sbjct: 207 LAHHDPLTGLPNRLLFSDRTEQALASAQLHKRGCALLL---LDLDHF----KNINDSLGH 259

Query: 307 NRQVQLC--------GYHGEGIFLCQLDAEKN---LEAQPLVGLQRTL-RQFFIELRQRG 354
           N   +L         G    G+ L +L  ++    +E     G    L R+    L++  
Sbjct: 260 NVGDELLKGVAERFRGLFAPGVTLARLGGDEFAVLVENCSQPGQAAALARRILDALKEPL 319

Query: 355 GQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIER 414
             + H       +G+S+   D     +L+ +A  A+ +  +        Y   +    ++
Sbjct: 320 RFDDHALFINASIGISLFPGDALSAGQLLRNADSALFKAKSAGRDGYALYTEELTAHAQQ 379

Query: 415 RKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAED 474
           R  +   +++ +   ++ V YQP+ D  +  ++  EAL R++ P     S  E I IAE 
Sbjct: 380 RVEIAFELRRALQQQELRVHYQPVHDLATSRLIGVEALVRWEHPTRGLVSPAEFIPIAER 439

Query: 475 LGLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPT 534
            GLI Q+D  +  +A + + +          V++N S     +  ++   V  +L +T  
Sbjct: 440 TGLIAQVDAWVMDQACRQMCQWQQAGVALSFVAVNVSSRL-FARRELYDQVAQVLHDTGL 498

Query: 535 LAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKI 594
               + +E+TE+A  D      E +  LR  GV +AIDDFGTG+SS   L       LKI
Sbjct: 499 DPGCLELEVTESAVMDDPEVALEQMHRLRELGVRLAIDDFGTGYSSLLRLKRLPVQKLKI 558

Query: 595 DREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFA 654
           D+ FV  +       AIV+++  LAH++G++V AEG+E   +   L     +L QG++F 
Sbjct: 559 DQGFVAGLPWDEDDAAIVRVIIALAHSMGMQVHAEGIEQREQAAFLLGQACELGQGYWFG 618

Query: 655 KPLPLSNL 662
           +P+  + L
Sbjct: 619 RPVAAAQL 626