Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 950 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  187 bits (476), Expect = 2e-51
 Identities = 165/552 (29%), Positives = 267/552 (48%), Gaps = 41/552 (7%)

Query: 131 LFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQQ 190
           +F+    G+VI D   R+LA N      +GY++ ELLG   +       SQ  Y  M   
Sbjct: 407 VFEAASEGMVIMDATYRVLAVNDACCALSGYEREELLGRSIARIAGTPESQRQYEAMRDA 466

Query: 191 LREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYI-GFTTDLAPHLDRVLDKQAG 249
           L   G W G ++ +R SGEV+PQ + ++ +      + ++  F +DL+  + R ++++  
Sbjct: 467 LERHGHWQGELIEKRKSGEVYPQWVQLREVRDSDDSVTHVVAFISDLS--VRRKIEERLR 524

Query: 250 DV---ELLTQLPTLSKFSDQLK---QRLPKQQTTTGFVLAIQPKF----------SSDKY 293
            +   + LT L     F ++L    QR+ +       +     +F          ++D  
Sbjct: 525 YLTHYDDLTGLANRGLFKERLHEACQRVRRNGRNMAVLYIDLDRFKLLNESLGHEAADAL 584

Query: 294 YAQI-RRLAASLAQNRQV-QLCGYHGEGIFLCQLDAEKNLEAQPLVG---LQRTLRQFFI 348
             ++ RRL+ +LA+   + +L G      F+  LDA  +L +   +G   LQR  +   I
Sbjct: 585 LREVSRRLSTTLAEADTIARLSGDE----FVVLLDAYGSLSSLAHLGSRLLQRIRKPMVI 640

Query: 349 ELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLE--HHAGETRHINFYDR 406
           +          + V    +GVS+L  ++   E L+  A  AM +  H  G T    F DR
Sbjct: 641 D--------EQELVISASIGVSLLPDNSRDAEALLRQANIAMQQAKHLGGNTLQF-FTDR 691

Query: 407 AIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQ 466
                +   + LE  ++K +  G +EVFYQP +     S+   EAL R++ PEL   +  
Sbjct: 692 PQASSMHYLQ-LENQLRKALEVGQLEVFYQPRLSLADDSLEAAEALVRWRHPELGLVAPA 750

Query: 467 ELISIAEDLGLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVV 526
           + I +AE+ GLI  L E +  +A +   +        + VS+N S+   L     +  V 
Sbjct: 751 QFIPLAEETGLIIPLGEFVLREACRQARQWQQDGLAAIRVSVNLSVKQ-LRQGNFVSLVR 809

Query: 527 DMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTE 586
            +L ET   A  + +ELTE+   D       + + LR  GV +AIDDFGTGFSS SYL  
Sbjct: 810 QVLEETGLPATMLELELTESQLLDDIDNAISISEQLRALGVKLAIDDFGTGFSSLSYLKR 869

Query: 587 CQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVD 646
              DY+KIDR F++ +E  S+  AI + +  + H+L  KVVAEGVET+ ++  LK+   D
Sbjct: 870 FPVDYVKIDRSFISELEHSSQDAAITRAIIAMVHSLERKVVAEGVETQAQMDFLKANHCD 929

Query: 647 LLQGFFFAKPLP 658
            +QG+  + P+P
Sbjct: 930 EIQGYLLSPPVP 941