Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1036 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  183 bits (465), Expect = 4e-50
 Identities = 146/547 (26%), Positives = 252/547 (46%), Gaps = 30/547 (5%)

Query: 130 ALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQ 189
           ++++N    + + D +  I+  N  F   TGY   E+LG   S F   ++   FY ++ Q
Sbjct: 460 SVYNNSSEAMSVMDHKGNIITVNAAFADITGYSPKEVLGHHISQFYCPRNKPAFYDEVNQ 519

Query: 190 QLREQGGWSGTILSQRASGEVWPQDLSIKRL-----SPQKGQIFYIGFTTDLAPHLDRVL 244
            ++E G W G +  Q  +G+ +   L++  +      P +    +   T   A   ++++
Sbjct: 520 AIKETGRWQGEMWQQHKNGKEYLIWLTVNTIYDAYQRPHRRVALFSDITEKKAQ--EQLI 577

Query: 245 DKQAGDVELLTQLPTLSKFSDQLKQR--LPKQQTTTGFVLAIQPKF-----------SSD 291
            +QA + + LT+LP      D L +   L  +Q     +L +   F             D
Sbjct: 578 WQQA-NYDPLTKLPNRRMLLDYLDREISLASRQNVRFALLFLDLDFFKEVNDTLGHDMGD 636

Query: 292 KYYAQIR-RLAASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIEL 350
           K   +   R+ A +  +  V   G     + +  +     +E      L+     F    
Sbjct: 637 KLLIECADRIKACIRDSDVVARLGGDEFTVLIRDIHDVGGVERAASNILKAIAEPF---- 692

Query: 351 RQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQ 410
            Q G   A+ +V+   +G+++   D    E L+ +A QAM           N++  ++ +
Sbjct: 693 -QLGPDSAYISVS---IGITLFPEDASTREALLKNADQAMYAAKEQGRNRFNYFTPSMQE 748

Query: 411 QIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELIS 470
           Q + R  L + ++  I +    + YQPIV  QS  V K EAL R+  PE  + S  E I 
Sbjct: 749 QAKYRMRLIQDLRIAIEHQQFNLVYQPIVHLQSGKVHKAEALLRWHHPERGYISPTEFIP 808

Query: 471 IAEDLGLINQLDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLA 530
           +AED GLI ++   +   A +     H  FG  + +S+N+S        +  +  V +L 
Sbjct: 809 VAEDTGLIMEIGSWVFEHAARQCRDWHHEFGTTIQLSVNKSPVQFRDEGENFERWVALLE 868

Query: 531 ETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFD 590
           E       I +E+TE    D+ S   E L   R+ G+ V++DDFGTG+SS +YL +   D
Sbjct: 869 ELELTHGGICIEITEGLLLDASSGVAEKLLTYRDAGIQVSLDDFGTGYSSLAYLKKFDID 928

Query: 591 YLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQG 650
           YLKID+ F  N+E  +    + + +  +A  LG+KV+AEGVET  +  +LK++G D  QG
Sbjct: 929 YLKIDQSFTRNLENDASDRTLCEAIIVMAQKLGMKVIAEGVETAKQQEILKAMGCDYAQG 988

Query: 651 FFFAKPL 657
           + ++ P+
Sbjct: 989 YLYSAPV 995



 Score = 26.6 bits (57), Expect = 0.008
 Identities = 29/133 (21%), Positives = 51/133 (38%), Gaps = 24/133 (18%)

Query: 122 MESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQ 181
           ++  F F + F+  + G+ IT    R +  N    Q   Y + ELL +     +   H +
Sbjct: 200 LQDDFLFRSQFNVGNIGIAITSVDKRWIKVNPRLCQMLKYSEKELLSMNWEQMS---HEE 256

Query: 182 HFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHLD 241
              VD+               +Q  +G +   +L+ KR   + G I Y         H+ 
Sbjct: 257 DISVDL------------AHFNQMLAGAIDQYELN-KRFYAKDGSIVY--------THMT 295

Query: 242 RVLDKQAGDVELL 254
               + AG V+L+
Sbjct: 296 VACKRIAGKVQLV 308