Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  198 bits (503), Expect = 1e-54
 Identities = 158/577 (27%), Positives = 269/577 (46%), Gaps = 37/577 (6%)

Query: 108 VRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELL 167
           V GT   +  + +  E  F    +F+N   GV+ITD    I   N  FE  TGY ++E++
Sbjct: 183 VIGTTRDIARYKAAEEQLFLTSKVFENAIEGVMITDSNGIITEINGAFETITGYSRDEVI 242

Query: 168 GLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQI 227
           G    + NSG+H + F+ ++W+ L+ QG W G I ++R +G ++ +  SI  +  + GQ+
Sbjct: 243 GKTPKLLNSGRHERDFFENLWRALKTQGHWHGEIWNRRKNGTLFAEQTSISAVYGEDGQV 302

Query: 228 -FYIGFTTDLAPHLDRVLDKQAGDV------ELLTQLPTLSKFSDQLKQRLP---KQQTT 277
             ++   +D++     +L +   +V      + LT+LP  SK +   +Q++     ++T 
Sbjct: 303 RCFVAVFSDIS-----LLKQTEAEVAQLAWHDPLTRLPNRSKLTTISQQQIKLAANRKTR 357

Query: 278 TGFVLAIQPKF----------SSDKYYAQI-RRLAASLAQNRQVQLCGYHGEGIFLCQLD 326
              +L     F          + DK    +  RLAA L     +   G   E + L Q+ 
Sbjct: 358 LALLLIDVDLFKHINDSFGHLAGDKVLLSLSERLAALLGAEDTLARIG-GDEFVLLTQVR 416

Query: 327 AEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHA 386
              ++    L  +QR     F         E         +G++V   D D  + L+ +A
Sbjct: 417 RRDDIPVI-LSAIQRAFDTSF------DTSEGESVRLSASIGIAVYPDDGDNPDTLLKNA 469

Query: 387 IQAMLE-HHAGETRHINFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWS 445
             AM      G  RH  FY   + Q   ++  L+  ++  + N  + + YQP ++ ++  
Sbjct: 470 DAAMYRAKQQGRNRHA-FYTEQMTQSSMQQLRLQTALRGAVKNSALSLVYQPKINLRTRK 528

Query: 446 VVKFEALCRFQAPELLHASTQELISIAEDLGLINQLDELIGGKALKDLPKIHALFGHHVG 505
           ++  EALCR+   EL   S  E I +AE +GL+ ++   +  +A +   +I    G + G
Sbjct: 529 LIGVEALCRWTDHELGVVSPAEFIPVAESIGLMPEIGLWVLKEACRQA-RIWRDQGLNPG 587

Query: 506 VSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNR 565
                   S L+ +    SV  +L +T      + +E+TE+   D+ +   + +  LR  
Sbjct: 588 RMAVNVSGSQLTGDNFADSVARVLTQTGLSPDALELEITESVVLDNPASAIDTMDKLRGM 647

Query: 566 GVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVK 625
           GV++A+DDFGTG+SS SYL +   + LKID+ FV  +       AI   +  +   L + 
Sbjct: 648 GVSLALDDFGTGYSSLSYLRKLPLNKLKIDQSFVRELPTDQDSGAIAMAIIAMGEALKLG 707

Query: 626 VVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLSNL 662
           V+AEGVE E +   L  LG    QG+ FA+PL  S L
Sbjct: 708 VIAEGVENETQAEFLLRLGCTEAQGYLFARPLLASEL 744